miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
62327168 NC_006938.1 Bacteriophage phi JL001

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31758 + 38228 89 20.5 -23.1 5' arm      3' arm
31767 + 49081 90 19.5 -26.41 5' arm      3' arm
31851 - 31425 88 19 -27.3 5' arm      3' arm
31887 - 49676 85 20 -30.2 5' arm      3' arm
31864 - 38316 90 21 -24.6 5' arm      3' arm
31749 + 31338 88 23 -26.8 5' arm      3' arm
31824 - 21103 90 20.5 -27.8 5' arm      3' arm
31790 - 5571 87 22 -31.7 5' arm      3' arm
31840 - 27653 90 19 -21.1 5' arm      3' arm
31781 - 99 89 24.5 -23 YP_223925 5' arm      3' arm
31713 + 1168 87 21.5 -21 YP_223928 5' arm      3' arm
31714 + 2002 90 20 -23 YP_223929 5' arm      3' arm
31782 - 1405 89 19 -22.3 YP_223929 5' arm      3' arm
31787 - 2602 90 20 -23.7 YP_223929 5' arm      3' arm
31785 - 1957 89 21.5 -23.4 YP_223929 5' arm      3' arm
31784 - 1698 88 20.5 -25.2 YP_223929 5' arm      3' arm
31783 - 1605 88 22.5 -20.4 YP_223929 5' arm      3' arm
31786 - 2222 89 21 -24.6 YP_223929 5' arm      3' arm
31788 - 4100 89 25 -22.1 YP_223931 5' arm      3' arm
31789 - 4743 87 19.5 -24.9 YP_223931 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.