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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31911 | - | 63460 | 89 | 19 | -24.9 | YP_224014 | 5' arm 3' arm | ||
| 31912 | - | 63557 | 87 | 19 | -20.6 | YP_224014 | 5' arm 3' arm | ||
| 31908 | - | 62332 | 89 | 22.5 | -25.6 | YP_224012 | 5' arm 3' arm | ||
| 31779 | + | 61649 | 90 | 21.5 | -19.7 | YP_224012 | 5' arm 3' arm | ||
| 31780 | + | 62336 | 83 | 21 | -19.4 | YP_224012 | 5' arm 3' arm | ||
| 31909 | - | 62421 | 89 | 23 | -21.1 | YP_224012 | 5' arm 3' arm | ||
| 31778 | + | 61392 | 90 | 21 | -27.9 | YP_224012 | 5' arm 3' arm | ||
| 31910 | - | 62884 | 90 | 20 | -22 | YP_224012 | 5' arm 3' arm | ||
| 31907 | - | 59492 | 86 | 19 | -26.06 | YP_224011 | 5' arm 3' arm | ||
| 31906 | - | 59248 | 90 | 19.5 | -20.5 | YP_224011 | 5' arm 3' arm | ||
| 31905 | - | 59086 | 90 | 24.5 | -21.5 | YP_224011 | 5' arm 3' arm | ||
| 31777 | + | 58178 | 87 | 21 | -23.1 | YP_224010 | 5' arm 3' arm | ||
| 31900 | - | 56032 | 89 | 19.5 | -25.2 | YP_224010 | 5' arm 3' arm | ||
| 31775 | + | 57808 | 90 | 19 | -21.7 | YP_224010 | 5' arm 3' arm | ||
| 31902 | - | 57342 | 88 | 20.5 | -19.4 | YP_224010 | 5' arm 3' arm | ||
| 31899 | - | 55641 | 89 | 19.5 | -24.3 | YP_224010 | 5' arm 3' arm | ||
| 31904 | - | 58332 | 90 | 22.5 | -21.5 | YP_224010 | 5' arm 3' arm | ||
| 31903 | - | 57631 | 87 | 19.5 | -24.2 | YP_224010 | 5' arm 3' arm | ||
| 31901 | - | 56419 | 88 | 23 | -22.9 | YP_224010 | 5' arm 3' arm | ||
| 31776 | + | 57954 | 90 | 19 | -20.9 | YP_224010 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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