miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
62327168 NC_006938.1 Bacteriophage phi JL001

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31724 + 10152 90 20.5 -36 YP_223938 5' arm      3' arm
31897 - 54320 87 22 -32.7 YP_224008 5' arm      3' arm
31754 + 34312 88 19 -32.1 YP_223984 5' arm      3' arm
31790 - 5571 87 22 -31.7 5' arm      3' arm
31727 + 12374 90 24 -31.5 YP_223943 5' arm      3' arm
31861 - 37117 90 22 -30.9 YP_223989 5' arm      3' arm
31745 + 28036 87 19.5 -30.9 YP_223971 5' arm      3' arm
31879 - 42613 89 21 -30.8 YP_223995 5' arm      3' arm
31747 + 30132 90 19.5 -30.3 YP_223979 5' arm      3' arm
31898 - 54536 89 22 -30.3 YP_224008 5' arm      3' arm
31887 - 49676 85 20 -30.2 5' arm      3' arm
31842 - 28581 90 20.5 -30.1 YP_223973 5' arm      3' arm
31718 + 6320 85 21.5 -30.1 YP_223935 5' arm      3' arm
31725 + 10369 90 19.5 -30 YP_223938 5' arm      3' arm
31814 - 17207 89 24.5 -29.8 YP_223951 5' arm      3' arm
31822 - 20341 90 20 -29.8 YP_223955 5' arm      3' arm
31798 - 8368 90 21 -29.5 YP_223937 5' arm      3' arm
31733 + 17638 89 20.5 -29 YP_223952 5' arm      3' arm
31737 + 21589 88 21 -28.46 YP_223957 5' arm      3' arm
31877 - 41706 88 19.5 -28.3 YP_223994 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.