miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
62327168 NC_006938.1 Bacteriophage phi JL001

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31735 + 19880 89 19 -22.7 YP_223954 5' arm      3' arm
31769 + 51474 90 19 -23 YP_224006 5' arm      3' arm
31757 + 37143 90 19 -19.4 YP_223989 5' arm      3' arm
31912 - 63557 87 19 -20.6 YP_224014 5' arm      3' arm
31755 + 35691 87 19 -20.1 YP_223986 5' arm      3' arm
31764 + 43429 87 19 -25 YP_223996 5' arm      3' arm
31766 + 48380 89 19 -24.6 YP_224002 5' arm      3' arm
31728 + 14276 90 19 -26.8 YP_223946 5' arm      3' arm
31731 + 17018 89 19 -22.1 YP_223950 5' arm      3' arm
31750 + 31827 87 19 -20 YP_223982 5' arm      3' arm
31722 + 9348 88 19 -20 YP_223938 5' arm      3' arm
31759 + 38774 87 19 -20.8 YP_223991 5' arm      3' arm
31770 + 51983 87 19 -19.5 YP_224006 5' arm      3' arm
31754 + 34312 88 19 -32.1 YP_223984 5' arm      3' arm
31717 + 4655 90 19 -22.6 YP_223931 5' arm      3' arm
31775 + 57808 90 19 -21.7 YP_224010 5' arm      3' arm
31776 + 57954 90 19 -20.9 YP_224010 5' arm      3' arm
31911 - 63460 89 19 -24.9 YP_224014 5' arm      3' arm
31719 + 8311 90 19 -20.5 YP_223937 5' arm      3' arm
31732 + 17131 90 19 -23.8 YP_223951 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.