miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
62327168 NC_006938.1 Bacteriophage phi JL001

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31870 - 39921 90 25.5 -21.1 YP_223992 5' arm      3' arm
31788 - 4100 89 25 -22.1 YP_223931 5' arm      3' arm
31816 - 17424 86 24.5 -27 YP_223952 5' arm      3' arm
31905 - 59086 90 24.5 -21.5 YP_224011 5' arm      3' arm
31814 - 17207 89 24.5 -29.8 YP_223951 5' arm      3' arm
31781 - 99 89 24.5 -23 YP_223925 5' arm      3' arm
31727 + 12374 90 24 -31.5 YP_223943 5' arm      3' arm
31815 - 17323 89 24 -20.7 YP_223951 5' arm      3' arm
31886 - 49353 90 23.5 -21.8 YP_224004 5' arm      3' arm
31821 - 19895 90 23 -28 YP_223954 5' arm      3' arm
31749 + 31338 88 23 -26.8 5' arm      3' arm
31901 - 56419 88 23 -22.9 YP_224010 5' arm      3' arm
31841 - 28231 90 23 -23.8 YP_223972 5' arm      3' arm
31909 - 62421 89 23 -21.1 YP_224012 5' arm      3' arm
31806 - 12113 90 23 -20.8 YP_223942 5' arm      3' arm
31829 - 23490 87 23 -22.4 YP_223958 5' arm      3' arm
31863 - 37949 89 23 -22.6 YP_223990 5' arm      3' arm
31721 + 8559 87 23 -23.3 YP_223937 5' arm      3' arm
31904 - 58332 90 22.5 -21.5 YP_224010 5' arm      3' arm
31742 + 24914 90 22.5 -22.6 YP_223962 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.