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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31827 | - | 22508 | 89 | 21 | -20.1 | YP_223957 | 5' arm 3' arm | ||
| 31826 | - | 22046 | 85 | 20 | -22.9 | YP_223957 | 5' arm 3' arm | ||
| 31829 | - | 23490 | 87 | 23 | -22.4 | YP_223958 | 5' arm 3' arm | ||
| 31830 | - | 24288 | 90 | 21.5 | -20.1 | YP_223960 | 5' arm 3' arm | ||
| 31831 | - | 24432 | 88 | 19.5 | -21.7 | YP_223960 | 5' arm 3' arm | ||
| 31832 | - | 24852 | 90 | 21 | -23.9 | YP_223961 | 5' arm 3' arm | ||
| 31741 | + | 24724 | 87 | 19.5 | -24.7 | YP_223961 | 5' arm 3' arm | ||
| 31740 | + | 24416 | 90 | 19.5 | -24.5 | YP_223961 | 5' arm 3' arm | ||
| 31742 | + | 24914 | 90 | 22.5 | -22.6 | YP_223962 | 5' arm 3' arm | ||
| 31833 | - | 25175 | 89 | 20.5 | -22.6 | YP_223963 | 5' arm 3' arm | ||
| 31834 | - | 25540 | 88 | 21.5 | -24.6 | YP_223964 | 5' arm 3' arm | ||
| 31835 | - | 25918 | 87 | 20.5 | -22 | YP_223965 | 5' arm 3' arm | ||
| 31743 | + | 25748 | 89 | 20 | -20.6 | YP_223965 | 5' arm 3' arm | ||
| 31836 | - | 26409 | 90 | 20 | -24.9 | YP_223967 | 5' arm 3' arm | ||
| 31744 | + | 26288 | 89 | 21.5 | -20.5 | YP_223967 | 5' arm 3' arm | ||
| 31837 | - | 26676 | 88 | 19.5 | -23.9 | YP_223968 | 5' arm 3' arm | ||
| 31839 | - | 27395 | 90 | 19.5 | -20 | YP_223969 | 5' arm 3' arm | ||
| 31838 | - | 27261 | 89 | 19.5 | -21.7 | YP_223969 | 5' arm 3' arm | ||
| 31745 | + | 28036 | 87 | 19.5 | -30.9 | YP_223971 | 5' arm 3' arm | ||
| 31841 | - | 28231 | 90 | 23 | -23.8 | YP_223972 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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