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| GenBank Identifier | RefSeq Acc. | Name |
| 62327168 | NC_006938.1 | Bacteriophage phi JL001 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31869 | - | 39683 | 88 | 22 | -25.5 | YP_223992 | 5' arm 3' arm | ||
| 31868 | - | 39377 | 90 | 20.5 | -23.3 | YP_223991 | 5' arm 3' arm | ||
| 31865 | - | 38458 | 90 | 20 | -21.1 | YP_223991 | 5' arm 3' arm | ||
| 31866 | - | 38715 | 89 | 20.5 | -20.4 | YP_223991 | 5' arm 3' arm | ||
| 31867 | - | 38862 | 87 | 21.5 | -21.6 | YP_223991 | 5' arm 3' arm | ||
| 31761 | + | 39195 | 90 | 20.5 | -25.5 | YP_223991 | 5' arm 3' arm | ||
| 31759 | + | 38774 | 87 | 19 | -20.8 | YP_223991 | 5' arm 3' arm | ||
| 31760 | + | 39030 | 90 | 21.5 | -21.5 | YP_223991 | 5' arm 3' arm | ||
| 31863 | - | 37949 | 89 | 23 | -22.6 | YP_223990 | 5' arm 3' arm | ||
| 31862 | - | 37616 | 90 | 20 | -25.2 | YP_223990 | 5' arm 3' arm | ||
| 31757 | + | 37143 | 90 | 19 | -19.4 | YP_223989 | 5' arm 3' arm | ||
| 31861 | - | 37117 | 90 | 22 | -30.9 | YP_223989 | 5' arm 3' arm | ||
| 31756 | + | 36455 | 89 | 20.5 | -24.8 | YP_223986 | 5' arm 3' arm | ||
| 31755 | + | 35691 | 87 | 19 | -20.1 | YP_223986 | 5' arm 3' arm | ||
| 31860 | - | 35396 | 90 | 20 | -21.9 | YP_223985 | 5' arm 3' arm | ||
| 31858 | - | 34473 | 90 | 20.5 | -21.4 | YP_223984 | 5' arm 3' arm | ||
| 31754 | + | 34312 | 88 | 19 | -32.1 | YP_223984 | 5' arm 3' arm | ||
| 31859 | - | 34987 | 87 | 20.5 | -23.1 | YP_223984 | 5' arm 3' arm | ||
| 31751 | + | 32216 | 90 | 19.5 | -19.9 | YP_223983 | 5' arm 3' arm | ||
| 31752 | + | 32498 | 88 | 20 | -20.3 | YP_223983 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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