miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
238	+	34876	75	20	-27.8	AP_000231		5' arm      3' arm
272	-	33873	90	23	-22.9	AP_000228		5' arm      3' arm
237	+	33940	78	20	-22.3	AP_000227		5' arm      3' arm
271	-	29750	87	26.5	-26.3	AP_000221		5' arm      3' arm
270	-	27474	90	19.5	-20.2	AP_000217		5' arm      3' arm
269	-	26765	90	24.5	-24.4	AP_000216		5' arm      3' arm
268	-	26583	90	24	-26.2	AP_000216		5' arm      3' arm
267	-	26237	86	24.5	-35	AP_000214		5' arm      3' arm
236	+	25848	90	22	-37.3	AP_000214		5' arm      3' arm
266	-	24675	90	20	-32.7	AP_000214		5' arm      3' arm
235	+	23799	90	20	-23	AP_000213		5' arm      3' arm
234	+	23232	79	19	-25.8	AP_000213		5' arm      3' arm
265	-	21711	90	21.5	-23.02	AP_000211		5' arm      3' arm
264	-	21373	89	20.5	-21.3	AP_000211		5' arm      3' arm
263	-	18970	89	20	-27.7	AP_000211		5' arm      3' arm
233	+	20345	87	26	-29.9	AP_000211		5' arm      3' arm
259	-	18402	90	19	-32.4	AP_000210		5' arm      3' arm
261	-	18598	89	20	-20.4	AP_000210		5' arm      3' arm
262	-	18706	88	22	-26.2	AP_000210		5' arm      3' arm
260	-	18503	88	23.5	-23.8	AP_000210		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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