miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
271	-	29750	87	26.5	-26.3	AP_000221		5' arm      3' arm
233	+	20345	87	26	-29.9	AP_000211		5' arm      3' arm
218	+	5302	88	25.5	-25.9	AP_000201		5' arm      3' arm
216	+	4526	90	25	-29.9	AP_000201		5' arm      3' arm
267	-	26237	86	24.5	-35	AP_000214		5' arm      3' arm
269	-	26765	90	24.5	-24.4	AP_000216		5' arm      3' arm
258	-	17271	90	24.5	-20.5	AP_000208		5' arm      3' arm
268	-	26583	90	24	-26.2	AP_000216		5' arm      3' arm
260	-	18503	88	23.5	-23.8	AP_000210		5' arm      3' arm
228	+	10793	90	23	-22.6			5' arm      3' arm
246	-	10728	87	23	-36.1			5' arm      3' arm
220	+	5997	88	23	-25.5	AP_000202		5' arm      3' arm
230	+	16317	88	23	-23.9	AP_000207		5' arm      3' arm
250	-	12666	89	23	-29.7	AP_000205		5' arm      3' arm
272	-	33873	90	23	-22.9	AP_000228		5' arm      3' arm
247	-	11163	90	23	-28.9	AP_000204		5' arm      3' arm
223	+	8668	90	22.5	-21.6	AP_000203		5' arm      3' arm
221	+	6607	86	22.5	-28.2	AP_000202		5' arm      3' arm
262	-	18706	88	22	-26.2	AP_000210		5' arm      3' arm
256	-	16239	89	22	-28.7	AP_000207		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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