miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
11193	-	31701	90	19	-25.6	NP_148821		5' arm      3' arm
11194	-	34132	88	19	-24.2	NP_148824		5' arm      3' arm
11200	-	83742	86	19	-19.8	NP_148885		5' arm      3' arm
11196	-	56590	90	19	-27.2	NP_148854		5' arm      3' arm
11195	-	41336	90	19.5	-20.7	NP_148834		5' arm      3' arm
11173	+	23732	90	19.5	-22.7	NP_148813		5' arm      3' arm
11192	-	29445	90	19.5	-22.3	NP_148817		5' arm      3' arm
11201	-	84293	87	19.5	-22	NP_148885		5' arm      3' arm
11189	-	19582	78	20	-20.4	NP_148808		5' arm      3' arm
11178	+	49181	90	20	-22	NP_148844		5' arm      3' arm
11191	-	26198	80	20.5	-20	NP_148815		5' arm      3' arm
11186	+	86802	88	20.5	-23.2	NP_148888		5' arm      3' arm
11180	+	50221	89	21	-20.4	NP_148844		5' arm      3' arm
11199	-	82022	90	21	-25.02	NP_148883		5' arm      3' arm
11198	-	77769	89	21.5	-25.7	NP_148879		5' arm      3' arm
11182	+	54800	89	21.5	-20.6	NP_148852		5' arm      3' arm
11188	-	11981	76	21.5	-22.7			5' arm      3' arm
11174	+	29446	89	21.5	-24.6	NP_148817		5' arm      3' arm
11202	-	93201	89	22	-22.3	NP_148895		5' arm      3' arm
11179	+	49282	90	22.5	-22.9	NP_148844		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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