miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8945 + 3966 88 20.5 -34.8 NP_064117 5' arm      3' arm
8959 + 18812 89 20 -23.7 NP_064132 5' arm      3' arm
8964 + 21416 87 20.5 -20.4 NP_064135 5' arm      3' arm
8965 + 21530 90 21.5 -27.9 NP_064135 5' arm      3' arm
8963 + 20273 89 21.5 -27.1 NP_064134 5' arm      3' arm
8955 + 16479 87 19 -22.8 NP_064131 5' arm      3' arm
8953 + 15434 79 20.5 -26.5 5' arm      3' arm
8956 + 16737 89 21 -24.3 NP_064131 5' arm      3' arm
8954 + 15842 83 21 -20.9 NP_064129 5' arm      3' arm
8957 + 17651 89 22 -24.1 NP_064132 5' arm      3' arm
8949 + 10727 87 19 -26.6 NP_064126 5' arm      3' arm
8952 + 13323 85 19.5 -23.1 NP_064127 5' arm      3' arm
8950 + 11164 90 20 -25.4 5' arm      3' arm
8951 + 13223 88 20.5 -22.2 NP_064127 5' arm      3' arm
8948 + 8844 89 19 -26 NP_064124 5' arm      3' arm
8946 + 6090 90 20.5 -23.3 NP_064119 5' arm      3' arm
8947 + 8658 90 25 -27 NP_064123 5' arm      3' arm
8943 + 2683 89 19 -30.5 NP_064116 5' arm      3' arm
8944 + 3340 89 19.5 -24.2 NP_064116 5' arm      3' arm
8942 + 1185 87 22.5 -25.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.