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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8945 | + | 3966 | 88 | 20.5 | -34.8 | NP_064117 | 5' arm 3' arm | ||
8959 | + | 18812 | 89 | 20 | -23.7 | NP_064132 | 5' arm 3' arm | ||
8964 | + | 21416 | 87 | 20.5 | -20.4 | NP_064135 | 5' arm 3' arm | ||
8965 | + | 21530 | 90 | 21.5 | -27.9 | NP_064135 | 5' arm 3' arm | ||
8963 | + | 20273 | 89 | 21.5 | -27.1 | NP_064134 | 5' arm 3' arm | ||
8955 | + | 16479 | 87 | 19 | -22.8 | NP_064131 | 5' arm 3' arm | ||
8953 | + | 15434 | 79 | 20.5 | -26.5 | 5' arm 3' arm | |||
8956 | + | 16737 | 89 | 21 | -24.3 | NP_064131 | 5' arm 3' arm | ||
8954 | + | 15842 | 83 | 21 | -20.9 | NP_064129 | 5' arm 3' arm | ||
8957 | + | 17651 | 89 | 22 | -24.1 | NP_064132 | 5' arm 3' arm | ||
8949 | + | 10727 | 87 | 19 | -26.6 | NP_064126 | 5' arm 3' arm | ||
8952 | + | 13323 | 85 | 19.5 | -23.1 | NP_064127 | 5' arm 3' arm | ||
8950 | + | 11164 | 90 | 20 | -25.4 | 5' arm 3' arm | |||
8951 | + | 13223 | 88 | 20.5 | -22.2 | NP_064127 | 5' arm 3' arm | ||
8948 | + | 8844 | 89 | 19 | -26 | NP_064124 | 5' arm 3' arm | ||
8946 | + | 6090 | 90 | 20.5 | -23.3 | NP_064119 | 5' arm 3' arm | ||
8947 | + | 8658 | 90 | 25 | -27 | NP_064123 | 5' arm 3' arm | ||
8943 | + | 2683 | 89 | 19 | -30.5 | NP_064116 | 5' arm 3' arm | ||
8944 | + | 3340 | 89 | 19.5 | -24.2 | NP_064116 | 5' arm 3' arm | ||
8942 | + | 1185 | 87 | 22.5 | -25.8 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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