miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9283 - 76376 89 22 -36.3 5' arm      3' arm
9281 - 75966 90 28.5 -35.1 5' arm      3' arm
9031 + 76282 83 24.5 -35.1 5' arm      3' arm
8945 + 3966 88 20.5 -34.8 NP_064117 5' arm      3' arm
9032 + 77347 90 22.5 -34.8 5' arm      3' arm
9212 - 23644 90 21.5 -34.2 NP_064136 5' arm      3' arm
9185 - 3585 87 25 -34.2 NP_064117 5' arm      3' arm
9286 - 77825 89 21 -34 5' arm      3' arm
9234 - 41365 89 20.5 -33.4 NP_064150 5' arm      3' arm
8978 + 32485 88 24 -33.2 NP_064141 5' arm      3' arm
9153 + 152838 86 26 -33.16 5' arm      3' arm
9131 + 131119 89 24 -32.5 NP_064199 5' arm      3' arm
9186 - 4157 86 22 -32.2 NP_064117 5' arm      3' arm
9073 + 93471 90 24 -32 NP_064174 5' arm      3' arm
9235 - 42853 85 19.5 -32 NP_064151 5' arm      3' arm
9205 - 18666 90 20.5 -31.7 NP_064132 5' arm      3' arm
9117 + 121114 89 19 -31.5 NP_064189 5' arm      3' arm
8999 + 45550 90 19 -31.5 NP_064151 5' arm      3' arm
9037 + 79150 90 23 -31.4 5' arm      3' arm
9377 - 194473 88 25 -31.4 NP_064249 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.