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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9121 | + | 123145 | 89 | 19 | -19.4 | NP_064192 | 5' arm 3' arm | ||
9003 | + | 48077 | 89 | 20.5 | -19.5 | NP_064153 | 5' arm 3' arm | ||
9320 | - | 113097 | 90 | 19.5 | -19.6 | NP_064185 | 5' arm 3' arm | ||
9258 | - | 60170 | 90 | 19.5 | -19.6 | NP_064158 | 5' arm 3' arm | ||
9198 | - | 13233 | 89 | 20 | -19.6 | NP_064127 | 5' arm 3' arm | ||
9112 | + | 116663 | 90 | 21 | -19.7 | NP_064186 | 5' arm 3' arm | ||
9074 | + | 93693 | 89 | 24.5 | -19.7 | NP_064174 | 5' arm 3' arm | ||
8972 | + | 28866 | 89 | 19.5 | -19.7 | NP_064139 | 5' arm 3' arm | ||
8983 | + | 37485 | 90 | 19 | -19.7 | 5' arm 3' arm | |||
9164 | + | 170568 | 90 | 22 | -19.7 | NP_064231 | 5' arm 3' arm | ||
9369 | - | 183760 | 88 | 21 | -19.8 | NP_064241 | 5' arm 3' arm | ||
9134 | + | 136067 | 86 | 21.5 | -19.8 | NP_064202 | 5' arm 3' arm | ||
9298 | - | 95876 | 89 | 20.5 | -19.8 | NP_064175 | 5' arm 3' arm | ||
9324 | - | 115764 | 89 | 22 | -19.8 | NP_064186 | 5' arm 3' arm | ||
9365 | - | 175938 | 89 | 22.5 | -19.9 | NP_064236 | 5' arm 3' arm | ||
9122 | + | 124844 | 89 | 19 | -19.9 | NP_064193 | 5' arm 3' arm | ||
9246 | - | 52971 | 90 | 20 | -19.9 | NP_064154 | 5' arm 3' arm | ||
9095 | + | 108629 | 89 | 19.5 | -19.9 | NP_064183 | 5' arm 3' arm | ||
9126 | + | 126977 | 88 | 19 | -19.9 | NP_064195 | 5' arm 3' arm | ||
8981 | + | 35295 | 86 | 23 | -20 | NP_064143 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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