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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9268 | - | 64577 | 90 | 19.5 | -23.5 | NP_064160 | 5' arm 3' arm | ||
9004 | + | 49706 | 89 | 19.5 | -21 | NP_064154 | 5' arm 3' arm | ||
9083 | + | 102599 | 89 | 19.5 | -24.2 | NP_064180 | 5' arm 3' arm | ||
9133 | + | 133738 | 89 | 19.5 | -26.3 | NP_064202 | 5' arm 3' arm | ||
9011 | + | 58020 | 90 | 19.5 | -23.7 | NP_064156 | 5' arm 3' arm | ||
9012 | + | 58169 | 90 | 19.5 | -28 | NP_064156 | 5' arm 3' arm | ||
9140 | + | 141580 | 87 | 19.5 | -23.9 | NP_064205 | 5' arm 3' arm | ||
9049 | + | 84366 | 89 | 19.5 | -30.9 | NP_064166 | 5' arm 3' arm | ||
9066 | + | 90513 | 89 | 19.5 | -24.7 | NP_064171 | 5' arm 3' arm | ||
9169 | + | 177555 | 87 | 19.5 | -23.2 | 5' arm 3' arm | |||
9361 | - | 156383 | 90 | 19.5 | -26.9 | NP_064216 | 5' arm | ||
9025 | + | 69983 | 88 | 19.5 | -28.4 | NP_064162 | 5' arm 3' arm | ||
9322 | - | 115046 | 89 | 19.5 | -26.8 | NP_064185 | 5' arm 3' arm | ||
9086 | + | 104730 | 89 | 19.5 | -20.9 | NP_064181 | 5' arm 3' arm | ||
9320 | - | 113097 | 90 | 19.5 | -19.6 | NP_064185 | 5' arm 3' arm | ||
9072 | + | 93309 | 90 | 19.5 | -20 | NP_064174 | 5' arm 3' arm | ||
9095 | + | 108629 | 89 | 19.5 | -19.9 | NP_064183 | 5' arm 3' arm | ||
9262 | - | 61808 | 83 | 19.5 | -21.2 | NP_064160 | 5' arm 3' arm | ||
9304 | - | 99200 | 87 | 19.5 | -22.6 | NP_064178 | 5' arm 3' arm | ||
9035 | + | 78810 | 88 | 19.5 | -26.8 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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