miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9268 - 64577 90 19.5 -23.5 NP_064160 5' arm      3' arm
9004 + 49706 89 19.5 -21 NP_064154 5' arm      3' arm
9083 + 102599 89 19.5 -24.2 NP_064180 5' arm      3' arm
9133 + 133738 89 19.5 -26.3 NP_064202 5' arm      3' arm
9011 + 58020 90 19.5 -23.7 NP_064156 5' arm      3' arm
9012 + 58169 90 19.5 -28 NP_064156 5' arm      3' arm
9140 + 141580 87 19.5 -23.9 NP_064205 5' arm      3' arm
9049 + 84366 89 19.5 -30.9 NP_064166 5' arm      3' arm
9066 + 90513 89 19.5 -24.7 NP_064171 5' arm      3' arm
9169 + 177555 87 19.5 -23.2 5' arm      3' arm
9361 - 156383 90 19.5 -26.9 NP_064216 5' arm      
9025 + 69983 88 19.5 -28.4 NP_064162 5' arm      3' arm
9322 - 115046 89 19.5 -26.8 NP_064185 5' arm      3' arm
9086 + 104730 89 19.5 -20.9 NP_064181 5' arm      3' arm
9320 - 113097 90 19.5 -19.6 NP_064185 5' arm      3' arm
9072 + 93309 90 19.5 -20 NP_064174 5' arm      3' arm
9095 + 108629 89 19.5 -19.9 NP_064183 5' arm      3' arm
9262 - 61808 83 19.5 -21.2 NP_064160 5' arm      3' arm
9304 - 99200 87 19.5 -22.6 NP_064178 5' arm      3' arm
9035 + 78810 88 19.5 -26.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.