miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630386 NC_001900.1 Mycobacteriophage D29

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7288 - 10229 87 20.5 -25.1 NP_046829 5' arm      3' arm
7174 + 10725 82 20 -24.7 NP_046830 5' arm      3' arm
7289 - 11302 80 22 -24.7 NP_046830 5' arm      3' arm
7175 + 11042 90 20.5 -25.4 NP_046830 5' arm      3' arm
7176 + 11925 81 19 -20.6 NP_046831 5' arm      3' arm
7290 - 11965 90 19 -19.4 NP_046831 5' arm      3' arm
7291 - 12076 89 21.5 -19.9 NP_046831 5' arm      3' arm
7177 + 12235 88 19 -31.2 NP_046832 5' arm      3' arm
7179 + 12795 87 22.5 -23.91 NP_046832 5' arm      3' arm
7295 - 12742 85 21 -24.6 NP_046832 5' arm      3' arm
7293 - 12441 89 20.5 -25.2 NP_046832 5' arm      3' arm
7294 - 12582 90 23 -19.4 NP_046832 5' arm      3' arm
7292 - 12219 87 20.5 -21.6 NP_046832 5' arm      3' arm
7296 - 13011 90 19 -21.4 NP_046832 5' arm      3' arm
7178 + 12550 87 19.5 -23.9 NP_046832 5' arm      3' arm
7297 - 13255 83 22.5 -25.8 NP_046833 5' arm      3' arm
7298 - 13414 90 19.5 -22 NP_046834 5' arm      3' arm
7180 + 13358 90 21 -24 NP_046834 5' arm      3' arm
7299 - 13775 90 23 -20.8 NP_046835 5' arm      3' arm
7181 + 13720 86 19.5 -21.5 NP_046835 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.