miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1517	-	43571	90	22	-24.06	NP_039733		5' arm      3' arm
1463	-	13160	89	22	-28.6			5' arm      3' arm
1475	-	17067	89	22	-22.3			5' arm      3' arm
1466	-	14052	89	22	-23.6	NP_039686		5' arm      3' arm
1460	-	12514	86	22	-26.4	NP_039682		5' arm      3' arm
1423	+	52086	87	22	-19.9			5' arm      3' arm
1518	-	44241	79	22	-23.9	NP_039734		5' arm      3' arm
1354	+	16087	90	22	-20	NP_039690		5' arm      3' arm
1402	+	40657	90	22	-22	NP_039728		5' arm      3' arm
1374	+	27333	87	22	-20.6	NP_039703		5' arm      3' arm
1397	+	39168	89	22	-31.5	NP_039723		5' arm      3' arm
1406	+	42396	88	22	-30.3	NP_039732		5' arm      3' arm
1458	-	12099	89	22	-21.9	NP_039681		5' arm      3' arm
1378	+	30160	85	22	-28.9	NP_039708		5' arm      3' arm
1489	-	24675	89	21.5	-23.3	NP_039697		5' arm      3' arm
1486	-	22508	89	21.5	-24.1	NP_039695		5' arm      3' arm
1389	+	33832	87	21.5	-26.2	NP_039714		5' arm      3' arm
1482	-	21490	90	21.5	-20.8	NP_039693		5' arm      3' arm
1392	+	35776	90	21.5	-29.4	NP_039717		5' arm      3' arm
1474	-	16690	85	21.5	-21.1	NP_039690		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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