miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
857	-	2119	90	23	-31.82	NP_050176		5' arm      3' arm
850	+	155676	89	19	-26	NP_050176		5' arm      3' arm
855	-	1516	89	21.5	-22	NP_050176		5' arm      3' arm
848	+	154732	90	21	-19.6	NP_050176		5' arm      3' arm
879	-	156646	90	26	-23.6	NP_050177		5' arm      3' arm
858	-	3325	90	26	-23.6	NP_050178		5' arm      3' arm
840	+	6965	90	25.5	-20.6	NP_050180		5' arm      3' arm
853	+	160165	85	19.5	-23.2	NP_050180		5' arm      3' arm
854	+	160286	90	25.5	-20.6	NP_050180		5' arm      3' arm
852	+	159748	90	21	-24.2	NP_050180		5' arm      3' arm
839	+	6844	85	19.5	-23.2	NP_050180		5' arm      3' arm
867	-	9752	90	19.5	-23	NP_050184		5' arm      3' arm
870	-	10538	90	21.5	-22.2	NP_050184		5' arm
868	-	9955	89	23.5	-28.7	NP_050184		5' arm      3' arm
869	-	10299	90	21	-20.4	NP_050184		5' arm      3' arm
871	-	13599	89	21.5	-27.4	NP_050186		5' arm      3' arm
872	-	49081	90	24	-19.5	NP_050212		3' arm
842	+	89319	80	20.5	-25.1	NP_050236		5' arm      3' arm
843	+	99137	88	20.5	-23.3	NP_050241		5' arm      3' arm
844	+	115990	90	24	-25.5	NP_050255		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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