miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12542	+	31573	77	20	-27.3	NP_542552		5' arm      3' arm
12541	+	31140	89	20	-30.6			5' arm      3' arm
12538	+	28713	85	20	-25.4	NP_542546		5' arm      3' arm
12537	+	28455	90	20.5	-20.1	NP_542546		5' arm      3' arm
12536	+	28312	90	21	-29.2	NP_542546		5' arm      3' arm
12535	+	25624	90	20	-24.5	NP_542538		5' arm      3' arm
12534	+	24458	83	20	-25.2	NP_542537		5' arm      3' arm
12533	+	24174	87	23.5	-27.7	NP_542537		5' arm      3' arm
12525	+	16717	86	19	-25.2	NP_542527		5' arm      3' arm
12528	+	19698	89	23	-22	NP_542531		5' arm      3' arm
12527	+	18655	88	22	-30.6	NP_542529		5' arm      3' arm
12531	+	22442	90	21	-26.2	NP_542536		5' arm      3' arm
12529	+	20033	89	19.5	-25.9	NP_542531		5' arm      3' arm
12530	+	22189	90	19.5	-29.3	NP_542535		5' arm      3' arm
12532	+	22892	88	19	-19.6	NP_542536		5' arm      3' arm
12581	-	364	86	19.5	-30.5			5' arm      3' arm
12683	-	75456	90	22.5	-31.1	NP_542606		5' arm      3' arm
12682	-	74169	90	21.5	-24.9	NP_542602		5' arm      3' arm
12681	-	73630	90	21	-19.6	NP_542602		5' arm      3' arm
12680	-	73068	78	20	-22.4	NP_542602		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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