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GenBank Identifier | RefSeq Acc. | Name |
77118167 | NC_007456.1 | Coliphage K1F |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
32998 | + | 3429 | 87 | 21.5 | -22.4 | YP_338094 | 5' arm 3' arm | ||
32999 | + | 4636 | 89 | 19.5 | -19.7 | YP_338094 | 5' arm 3' arm | ||
33000 | + | 6455 | 86 | 23 | -24.4 | YP_338096 | 5' arm 3' arm | ||
33001 | + | 7082 | 89 | 19.5 | -21 | 5' arm 3' arm | |||
33002 | + | 12922 | 90 | 20 | -21.5 | YP_338108 | 5' arm 3' arm | ||
33003 | + | 13290 | 90 | 21 | -23.8 | YP_338108 | 5' arm 3' arm | ||
33004 | + | 13444 | 88 | 19 | -19.4 | YP_338108 | 5' arm 3' arm | ||
33005 | + | 18754 | 90 | 22 | -23.8 | YP_338118 | 5' arm 3' arm | ||
33006 | + | 20607 | 87 | 21.5 | -24.8 | YP_338119 | 5' arm 3' arm | ||
33007 | + | 22290 | 87 | 20 | -29.5 | 5' arm 3' arm | |||
33008 | + | 22716 | 85 | 20.5 | -20.4 | YP_338121 | 5' arm 3' arm | ||
33009 | + | 25287 | 81 | 22 | -22.2 | 5' arm 3' arm | |||
33010 | + | 29451 | 90 | 23.5 | -24.9 | YP_338126 | 5' arm 3' arm | ||
33011 | + | 29770 | 89 | 21.5 | -23 | YP_338126 | 5' arm 3' arm | ||
33012 | + | 30671 | 87 | 19 | -20.3 | YP_338126 | 5' arm 3' arm | ||
33013 | - | 106 | 89 | 21 | -19.6 | 5' arm 3' arm | |||
33014 | - | 776 | 77 | 19 | -28 | 5' arm 3' arm | |||
33015 | - | 4385 | 89 | 20 | -20.8 | YP_338094 | 5' arm 3' arm | ||
33016 | - | 8850 | 89 | 19.5 | -20.8 | YP_338102 | 5' arm 3' arm | ||
33017 | - | 9334 | 89 | 20 | -19.9 | YP_338103 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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