miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
10241	+	43874	88	21.5	-35.5			5' arm      3' arm
10261	-	43964	90	25.5	-30.9			5' arm      3' arm
10262	-	44872	87	23	-31.2			5' arm      3' arm
10260	-	18091	88	24	-23.3	NP_077427		5' arm      3' arm
10263	-	66794	83	20.5	-23.3	NP_077452		5' arm      3' arm
10264	-	84465	89	19	-20.9	NP_077461		5' arm      3' arm
10268	-	105635	87	22	-30.7	NP_077476		5' arm      3' arm
10245	+	107245	90	21	-25.5	NP_077476		5' arm      3' arm
10254	+	122067	87	20.5	-23.5	NP_077476		5' arm      3' arm
10248	+	107946	89	24	-26	NP_077476		5' arm      3' arm
10255	+	122425	87	19	-20.1	NP_077476		5' arm      3' arm
10273	-	108402	90	22	-21.7	NP_077476		5' arm      3' arm
10256	+	122624	87	22	-30.7	NP_077476		5' arm      3' arm
10252	+	121143	90	19.5	-22.4	NP_077476		5' arm      3' arm
10272	-	107116	90	19.5	-22.4	NP_077476		5' arm      3' arm
10242	+	104772	89	21	-25	NP_077476		5' arm      3' arm
10281	-	122661	88	20	-24	NP_077476		5' arm      3' arm
10269	-	105834	87	19	-20.1	NP_077476		5' arm      3' arm
10271	-	106756	89	20	-23.5	NP_077476		5' arm      3' arm
10279	-	121014	90	21	-25.5	NP_077476		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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