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GenBank Identifier | RefSeq Acc. | Name |
13242399 | NC_002686.1 | Cercopithecine herpesvirus 7 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
10248 | + | 107946 | 89 | 24 | -26 | NP_077476 | 5' arm 3' arm | ||
10255 | + | 122425 | 87 | 19 | -20.1 | NP_077476 | 5' arm 3' arm | ||
10259 | + | 123499 | 90 | 20.5 | -22.2 | NP_077485 | 5' arm 3' arm | ||
10254 | + | 122067 | 87 | 20.5 | -23.5 | NP_077476 | 5' arm 3' arm | ||
10257 | + | 122780 | 90 | 21 | -27.7 | NP_077476 | 5' arm 3' arm | ||
10258 | + | 123400 | 87 | 21.5 | -20.4 | NP_077485 | 5' arm 3' arm | ||
10256 | + | 122624 | 87 | 22 | -30.7 | NP_077476 | 5' arm 3' arm | ||
10252 | + | 121143 | 90 | 19.5 | -22.4 | NP_077476 | 5' arm 3' arm | ||
10253 | + | 121503 | 89 | 20 | -23.5 | NP_077485 | 5' arm 3' arm | ||
10251 | + | 119857 | 90 | 22 | -21.7 | NP_077485 | 5' arm 3' arm | ||
10250 | + | 117997 | 90 | 22.5 | -23.9 | NP_077484 | 5' arm 3' arm | ||
10249 | + | 117675 | 89 | 25.5 | -25 | NP_077484 | 5' arm 3' arm | ||
10246 | + | 107338 | 80 | 19 | -32.7 | NP_077485 | 5' arm 3' arm | ||
10243 | + | 105598 | 88 | 20 | -24 | NP_077485 | 5' arm 3' arm | ||
10247 | + | 107696 | 87 | 20.5 | -24.9 | NP_077485 | 5' arm 3' arm | ||
10244 | + | 106640 | 89 | 20.5 | -32.4 | NP_077485 | 5' arm 3' arm | ||
10245 | + | 107245 | 90 | 21 | -25.5 | NP_077476 | 5' arm 3' arm | ||
10242 | + | 104772 | 89 | 21 | -25 | NP_077476 | 5' arm 3' arm | ||
10241 | + | 43874 | 88 | 21.5 | -35.5 | 5' arm 3' arm | |||
10276 | - | 120313 | 89 | 24 | -26 | NP_077485 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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