miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13242399 NC_002686.1 Cercopithecine herpesvirus 7

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10241 + 43874 88 21.5 -35.5 5' arm      3' arm
10253 + 121503 89 20 -23.5 NP_077485 5' arm      3' arm
10252 + 121143 90 19.5 -22.4 NP_077476 5' arm      3' arm
10256 + 122624 87 22 -30.7 NP_077476 5' arm      3' arm
10258 + 123400 87 21.5 -20.4 NP_077485 5' arm      3' arm
10257 + 122780 90 21 -27.7 NP_077476 5' arm      3' arm
10254 + 122067 87 20.5 -23.5 NP_077476 5' arm      3' arm
10259 + 123499 90 20.5 -22.2 NP_077485 5' arm      3' arm
10255 + 122425 87 19 -20.1 NP_077476 5' arm      3' arm
10251 + 119857 90 22 -21.7 NP_077485 5' arm      3' arm
10250 + 117997 90 22.5 -23.9 NP_077484 5' arm      3' arm
10248 + 107946 89 24 -26 NP_077476 5' arm      3' arm
10242 + 104772 89 21 -25 NP_077476 5' arm      3' arm
10245 + 107245 90 21 -25.5 NP_077476 5' arm      3' arm
10244 + 106640 89 20.5 -32.4 NP_077485 5' arm      3' arm
10247 + 107696 87 20.5 -24.9 NP_077485 5' arm      3' arm
10243 + 105598 88 20 -24 NP_077485 5' arm      3' arm
10246 + 107338 80 19 -32.7 NP_077485 5' arm      3' arm
10249 + 117675 89 25.5 -25 NP_077484 5' arm      3' arm
10260 - 18091 88 24 -23.3 NP_077427 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.