miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10834856 NC_002577.1 Gallid herpesvirus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9587 + 2851 90 24.5 -36.5 NP_066819 5' arm      3' arm
9757 - 130732 90 24.5 -36.5 NP_066900 5' arm      3' arm
9604 + 20996 88 24.5 -35.7 NP_066835 5' arm      3' arm
9679 + 160883 88 23 -35.4 NP_066903 5' arm      3' arm
9761 - 136588 88 23 -35.4 NP_066916 5' arm      3' arm
9610 + 41061 89 20 -34.3 NP_066845 5' arm      3' arm
9672 + 156242 90 20 -34 5' arm      3' arm
9768 - 141229 90 20 -34 5' arm      3' arm
9644 + 128000 87 28 -33.6 5' arm      3' arm
9698 - 5583 87 28 -33.6 5' arm      3' arm
9687 - 2797 90 29.5 -32.9 5' arm      3' arm
9655 + 130786 90 29.5 -32.9 5' arm      3' arm
9699 - 6718 90 33.5 -32.7 NP_066822 5' arm      3' arm
9643 + 126865 90 33.5 -32.7 NP_066897 5' arm      3' arm
9645 + 128545 89 23 -32.1 NP_066821 5' arm      3' arm
9697 - 5038 89 23 -32.1 NP_066898 5' arm      3' arm
9723 - 57913 86 19 -31.6 NP_066858 5' arm      3' arm
9758 - 130875 90 25.5 -30.9 5' arm      3' arm
9586 + 2708 90 25.5 -30.9 5' arm      3' arm
9742 - 116834 90 23 -30.6 NP_066888 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.