miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31519	+	6728	86	27	-29.2			5' arm      3' arm
31445	+	16367	89	23.5	-29			5' arm      3' arm
31449	-	4090	90	19	-28.8			5' arm      3' arm
31446	-	538	90	31.5	-28.7			5' arm      3' arm
31417	-	6118	90	24.5	-28.7			5' arm      3' arm
31468	+	3618	90	20	-28.7			5' arm      3' arm
31418	-	6227	90	21.5	-28.6	YP_184775		5' arm      3' arm
31488	+	11127	90	23	-28.5			5' arm      3' arm
31530	-	10865	85	22.5	-28.5			5' arm      3' arm
31444	+	5339	90	35.5	-28.5			5' arm      3' arm
31503	-	26336	89	21.5	-28.2			5' arm      3' arm
31520	+	10946	88	20.5	-28.1			5' arm      3' arm
31460	-	932	85	21.5	-28.1			5' arm      3' arm
31500	+	27982	90	19	-28.1			5' arm      3' arm
31470	+	14344	90	20.5	-27.9			5' arm      3' arm
31505	-	27555	90	24.5	-27.8	YP_184887		5' arm      3' arm
31438	+	1701	90	22.5	-27.8			5' arm      3' arm
31409	+	12942	89	25	-27.6			5' arm      3' arm
31493	+	10556	89	24.5	-27.6			5' arm      3' arm
31529	-	8811	89	27	-27.5			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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