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| GenBank Identifier | RefSeq Acc. | Name |
| 15617474 | NC_003102.1 | Spodoptera litura nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11671 | + | 74081 | 87 | 20 | -19.6 | NP_258347 | 5' arm 3' arm | ||
| 11683 | + | 134853 | 90 | 22.5 | -19.7 | NP_258404 | 5' arm 3' arm | ||
| 11676 | + | 102370 | 89 | 22 | -19.9 | NP_258373 | 5' arm 3' arm | ||
| 11673 | + | 89517 | 87 | 25.5 | -20 | 5' arm 3' arm | |||
| 11677 | + | 103125 | 90 | 22.5 | -20.4 | NP_258373 | 5' arm 3' arm | ||
| 11689 | - | 29566 | 89 | 20.5 | -20.7 | NP_258297 | 5' arm 3' arm | ||
| 11667 | + | 62039 | 90 | 23 | -20.7 | NP_258336 | 5' arm 3' arm | ||
| 11700 | - | 102007 | 88 | 23.5 | -21 | NP_258372 | 5' arm 3' arm | ||
| 11668 | + | 62267 | 90 | 22.5 | -21.1 | NP_258336 | 5' arm 3' arm | ||
| 11703 | - | 120933 | 85 | 19 | -21.2 | NP_258392 | 5' arm 3' arm | ||
| 11686 | - | 15816 | 86 | 21.5 | -21.3 | NP_258284 | 5' arm 3' arm | ||
| 11697 | - | 86048 | 89 | 20.5 | -21.3 | NP_258355 | 5' arm 3' arm | ||
| 11695 | - | 74857 | 79 | 21 | -21.4 | NP_258347 | 5' arm 3' arm | ||
| 11658 | + | 31682 | 83 | 19.5 | -21.5 | NP_258300 | 5' arm 3' arm | ||
| 11705 | - | 137012 | 89 | 23 | -21.5 | NP_258406 | 5' arm 3' arm | ||
| 11653 | + | 19933 | 84 | 19 | -21.6 | NP_258289 | 5' arm 3' arm | ||
| 11663 | + | 42117 | 88 | 20.5 | -21.7 | NP_258310 | 5' arm 3' arm | ||
| 11675 | + | 99432 | 85 | 20.5 | -22 | NP_258369 | 5' arm 3' arm | ||
| 11685 | - | 15060 | 89 | 23 | -22 | NP_258284 | 5' arm 3' arm | ||
| 11702 | - | 110565 | 89 | 21 | -22.1 | NP_258381 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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