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GenBank Identifier | RefSeq Acc. | Name |
15617474 | NC_003102.1 | Spodoptera litura nucleopolyhedrovirus |
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ID | strand | start position | length |
sRNA loop score![]() |
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
11692 | - | 42747 | 90 | 33 | -25.1 | 5' arm 3' arm | |||
11701 | - | 103654 | 90 | 28.5 | -24.9 | 5' arm 3' arm | |||
11682 | + | 132432 | 89 | 27 | -28.1 | 5' arm 3' arm | |||
11659 | + | 32426 | 89 | 26.5 | -26.7 | NP_258301 | 5' arm 3' arm | ||
11699 | - | 89603 | 87 | 26 | -23.2 | 5' arm 3' arm | |||
11673 | + | 89517 | 87 | 25.5 | -20 | 5' arm 3' arm | |||
11684 | - | 3522 | 89 | 25 | -25.8 | 5' arm 3' arm | |||
11655 | + | 25923 | 90 | 25 | -24.2 | 5' arm 3' arm | |||
11654 | + | 25814 | 87 | 25 | -33.5 | 5' arm 3' arm | |||
11650 | + | 3434 | 90 | 24.5 | -30.8 | 5' arm 3' arm | |||
11696 | - | 81537 | 90 | 24 | -32 | NP_258353 | 5' arm 3' arm | ||
11661 | + | 34877 | 89 | 24 | -23.5 | NP_258304 | 5' arm 3' arm | ||
11660 | + | 33110 | 88 | 23.5 | -28 | NP_258301 | 5' arm 3' arm | ||
11700 | - | 102007 | 88 | 23.5 | -21 | NP_258372 | 5' arm 3' arm | ||
11672 | + | 76509 | 90 | 23.5 | -31.5 | 5' arm 3' arm | |||
11685 | - | 15060 | 89 | 23 | -22 | NP_258284 | 5' arm 3' arm | ||
11667 | + | 62039 | 90 | 23 | -20.7 | NP_258336 | 5' arm 3' arm | ||
11705 | - | 137012 | 89 | 23 | -21.5 | NP_258406 | 5' arm 3' arm | ||
11688 | - | 23238 | 88 | 22.5 | -24.3 | NP_258291 | 5' arm 3' arm | ||
11677 | + | 103125 | 90 | 22.5 | -20.4 | NP_258373 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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