miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
15617474 NC_003102.1 Spodoptera litura nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
11692 - 42747 90 33 -25.1 5' arm      3' arm
11701 - 103654 90 28.5 -24.9 5' arm      3' arm
11682 + 132432 89 27 -28.1 5' arm      3' arm
11659 + 32426 89 26.5 -26.7 NP_258301 5' arm      3' arm
11699 - 89603 87 26 -23.2 5' arm      3' arm
11673 + 89517 87 25.5 -20 5' arm      3' arm
11684 - 3522 89 25 -25.8 5' arm      3' arm
11655 + 25923 90 25 -24.2 5' arm      3' arm
11654 + 25814 87 25 -33.5 5' arm      3' arm
11650 + 3434 90 24.5 -30.8 5' arm      3' arm
11696 - 81537 90 24 -32 NP_258353 5' arm      3' arm
11661 + 34877 89 24 -23.5 NP_258304 5' arm      3' arm
11660 + 33110 88 23.5 -28 NP_258301 5' arm      3' arm
11700 - 102007 88 23.5 -21 NP_258372 5' arm      3' arm
11672 + 76509 90 23.5 -31.5 5' arm      3' arm
11685 - 15060 89 23 -22 NP_258284 5' arm      3' arm
11667 + 62039 90 23 -20.7 NP_258336 5' arm      3' arm
11705 - 137012 89 23 -21.5 NP_258406 5' arm      3' arm
11688 - 23238 88 22.5 -24.3 NP_258291 5' arm      3' arm
11677 + 103125 90 22.5 -20.4 NP_258373 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.