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GenBank Identifier | RefSeq Acc. | Name |
15617474 | NC_003102.1 | Spodoptera litura nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
11688 | - | 23238 | 88 | 22.5 | -24.3 | NP_258291 | 5' arm 3' arm | ||
11655 | + | 25923 | 90 | 25 | -24.2 | 5' arm 3' arm | |||
11694 | - | 70724 | 90 | 19.5 | -24.2 | NP_258342 | 5' arm 3' arm | ||
11670 | + | 72196 | 90 | 21 | -23.9 | NP_258344 | 5' arm 3' arm | ||
11679 | + | 110496 | 88 | 21 | -23.9 | NP_258381 | 5' arm 3' arm | ||
11662 | + | 41996 | 87 | 20.5 | -23.6 | NP_258310 | 5' arm 3' arm | ||
11661 | + | 34877 | 89 | 24 | -23.5 | NP_258304 | 5' arm 3' arm | ||
11693 | - | 46118 | 88 | 20.5 | -23.5 | NP_258314 | 5' arm 3' arm | ||
11698 | - | 88008 | 86 | 19 | -23.4 | NP_258358 | 5' arm 3' arm | ||
11699 | - | 89603 | 87 | 26 | -23.2 | 5' arm 3' arm | |||
11674 | + | 98395 | 89 | 22 | -23.1 | NP_258368 | 5' arm 3' arm | ||
11678 | + | 106035 | 89 | 22 | -22.9 | NP_258375 | 5' arm 3' arm | ||
11666 | + | 61884 | 90 | 22 | -22.8 | NP_258336 | 5' arm 3' arm | ||
11669 | + | 63534 | 90 | 21.5 | -22.6 | NP_258336 | 5' arm 3' arm | ||
11681 | + | 131962 | 90 | 20.5 | -22.5 | NP_258403 | 5' arm 3' arm | ||
11656 | + | 26329 | 86 | 19 | -22.3 | 5' arm 3' arm | |||
11702 | - | 110565 | 89 | 21 | -22.1 | NP_258381 | 5' arm 3' arm | ||
11675 | + | 99432 | 85 | 20.5 | -22 | NP_258369 | 5' arm 3' arm | ||
11685 | - | 15060 | 89 | 23 | -22 | NP_258284 | 5' arm 3' arm | ||
11663 | + | 42117 | 88 | 20.5 | -21.7 | NP_258310 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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