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GenBank Identifier | RefSeq Acc. | Name |
58177829 | NC_003785.2 | Satsuma dwarf virus RNA 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15158 | + | 880 | 87 | 20 | -25.7 | NP_620566 | 5' arm 3' arm | ||
15159 | + | 973 | 87 | 22 | -33.2 | NP_620566 | 5' arm 3' arm | ||
15160 | + | 1239 | 90 | 19 | -20.54 | NP_620566 | 5' arm 3' arm | ||
15161 | + | 2423 | 90 | 21.5 | -22.4 | NP_620566 | 5' arm 3' arm | ||
15162 | + | 3080 | 90 | 20 | -22.27 | NP_620566 | 5' arm 3' arm | ||
15163 | + | 4385 | 86 | 20.5 | -25.4 | NP_620566 | 5' arm 3' arm | ||
15164 | - | 410 | 90 | 19.5 | -22.2 | NP_620566 | 5' arm 3' arm | ||
15165 | - | 670 | 90 | 20 | -25.5 | NP_620566 | 5' arm 3' arm | ||
15166 | + | 362 | 79 | 20.5 | -24.9 | NP_620567 | 5' arm 3' arm | ||
15167 | + | 874 | 90 | 19.5 | -24.4 | NP_620567 | 5' arm 3' arm | ||
15168 | + | 1367 | 89 | 20 | -21.04 | 5' arm 3' arm | |||
15169 | + | 1565 | 90 | 23.5 | -24 | NP_620567 | 5' arm 3' arm | ||
15170 | + | 4410 | 88 | 21.5 | -22.3 | NP_620567 | 5' arm 3' arm | ||
15171 | - | 671 | 90 | 20 | -25.5 | NP_620567 | 5' arm 3' arm | ||
15172 | - | 809 | 84 | 19.5 | -25.6 | NP_620567 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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