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| GenBank Identifier | RefSeq Acc. | Name |
| 51556461 | NC_006150.1 | Cercopithecine herpesvirus 8 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29352 | - | 205210 | 90 | 20.5 | -19.6 | YP_068298 | 5' arm 3' arm | ||
| 29256 | + | 205747 | 87 | 23 | -24.1 | YP_068297 | 5' arm 3' arm | ||
| 29351 | - | 205106 | 90 | 22.5 | -20.2 | YP_068297 | 5' arm 3' arm | ||
| 29350 | - | 204958 | 90 | 20 | -19.5 | YP_068297 | 5' arm 3' arm | ||
| 29254 | + | 203135 | 88 | 24 | -28.8 | YP_068294 | 5' arm 3' arm | ||
| 29255 | + | 203240 | 89 | 21.5 | -19.7 | YP_068293 | 5' arm 3' arm | ||
| 29349 | - | 196977 | 90 | 23 | -20.2 | YP_068287 | 5' arm 3' arm | ||
| 29347 | - | 195931 | 90 | 21.5 | -27.1 | YP_068286 | 5' arm 3' arm | ||
| 29252 | + | 190998 | 87 | 23 | -34.5 | YP_068278 | 5' arm 3' arm | ||
| 29343 | - | 184252 | 90 | 22.5 | -23.4 | YP_068270 | 5' arm 3' arm | ||
| 29342 | - | 184052 | 87 | 21.5 | -21.7 | YP_068270 | 5' arm 3' arm | ||
| 29250 | + | 181359 | 89 | 23 | -24.2 | YP_068267 | 5' arm 3' arm | ||
| 29249 | + | 180676 | 87 | 26 | -29 | YP_068265 | 5' arm 3' arm | ||
| 29340 | - | 180764 | 90 | 20.5 | -22.6 | YP_068264 | 5' arm 3' arm | ||
| 29247 | + | 174899 | 88 | 24.5 | -25.6 | YP_068260 | 5' arm 3' arm | ||
| 29246 | + | 172108 | 84 | 21.5 | -22.3 | YP_068256 | 5' arm 3' arm | ||
| 29245 | + | 171980 | 89 | 21.5 | -31.8 | YP_068256 | 5' arm 3' arm | ||
| 29339 | - | 172467 | 90 | 24.5 | -19.5 | YP_068256 | 5' arm 3' arm | ||
| 29244 | + | 169514 | 88 | 19 | -23.5 | YP_068253 | 5' arm 3' arm | ||
| 29243 | + | 168537 | 90 | 23.5 | -26.7 | YP_068252 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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