miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29301	-	70986	89	23	-29.3			5' arm      3' arm
29262	+	219934	88	20.5	-29.3	YP_068317		5' arm      3' arm
29240	+	161212	85	22.5	-29.3			5' arm      3' arm
29363	-	217887	89	21	-29.3	YP_068313		5' arm      3' arm
29180	+	92201	90	25.5	-29.2	YP_068192		5' arm      3' arm
29337	-	165502	90	23.5	-29.2	YP_068249		5' arm      3' arm
29249	+	180676	87	26	-29	YP_068265		5' arm      3' arm
29254	+	203135	88	24	-28.8	YP_068294		5' arm      3' arm
29326	-	148557	89	20	-28.8			5' arm      3' arm
29206	+	117667	89	21.5	-28.6	YP_068211		5' arm      3' arm
29365	-	219742	84	22.5	-28.5	YP_068317		5' arm      3' arm
29345	-	187039	85	22.5	-28.5			5' arm      3' arm
29336	-	162266	87	27.5	-28.4	YP_068246		5' arm      3' arm
29282	-	36019	89	21.5	-28.3	YP_068140		5' arm      3' arm
29333	-	161299	88	25	-28.2			5' arm      3' arm
29176	+	88299	87	22.5	-27.9	YP_068189		5' arm      3' arm
29230	+	147089	88	25	-27.9			5' arm      3' arm
29318	-	118162	90	21	-27.9	YP_068211		5' arm      3' arm
29302	-	71382	83	19.5	-27.8			5' arm      3' arm
29344	-	186561	90	27	-27.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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