miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29344	-	186561	90	27	-27.7			5' arm      3' arm
29164	+	4275	73	20	-27.7	YP_068099		5' arm      3' arm
29267	-	795	89	20	-27.6			5' arm      3' arm
29304	-	75062	87	23.5	-27.5	YP_068180		5' arm      3' arm
29196	+	113724	90	22.5	-27.4	YP_068207		5' arm      3' arm
29179	+	91729	90	21.5	-27.2	YP_068191		5' arm      3' arm
29272	-	2450	89	23.5	-27.2	YP_068095		5' arm      3' arm
29347	-	195931	90	21.5	-27.1	YP_068286		5' arm      3' arm
29194	+	111154	88	22	-27			5' arm      3' arm
29225	+	135637	88	21	-27			5' arm      3' arm
29172	+	75627	89	21	-26.9	YP_068180		5' arm      3' arm
29290	-	55528	90	19.5	-26.8	YP_068165		5' arm      3' arm
29243	+	168537	90	23.5	-26.7	YP_068252		5' arm      3' arm
29239	+	160929	90	28.5	-26.6			5' arm      3' arm
29356	-	214944	89	26	-26.6	YP_068308		5' arm      3' arm
29222	+	132057	87	21	-26.6	YP_068223		5' arm      3' arm
29248	+	180351	88	19.5	-26.5			5' arm      3' arm
29227	+	142305	90	19	-26.4	YP_068233		5' arm      3' arm
29322	-	135924	89	23	-26.4	YP_068230		5' arm      3' arm
29195	+	111523	87	23	-26.4	YP_068205		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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