miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29358	-	216111	89	22.5	-20.2	YP_068310		5' arm      3' arm
29349	-	196977	90	23	-20.2	YP_068287		5' arm      3' arm
29231	+	147181	89	21.5	-20.3			5' arm      3' arm
29213	+	125323	90	19.5	-20.3			5' arm      3' arm
29200	+	114253	90	26.5	-20.5	YP_068209		5' arm      3' arm
29224	+	134579	87	21.5	-20.5	YP_068229		5' arm      3' arm
29269	-	1426	90	20	-20.5	YP_068095		5' arm      3' arm
29217	+	127449	89	19	-20.6	YP_068220		5' arm      3' arm
29189	+	104971	89	23.5	-20.6			5' arm      3' arm
29229	+	143155	90	19.5	-20.6			5' arm      3' arm
29203	+	116157	90	20	-20.6	YP_068212		5' arm      3' arm
29286	-	48114	90	22.5	-20.71	YP_068154		5' arm      3' arm
29364	-	219515	90	21	-20.8	YP_068316		5' arm      3' arm
29329	-	152519	83	19	-20.8	YP_068240		5' arm      3' arm
29334	-	161544	90	29.5	-20.84			5' arm      3' arm
29341	-	182507	90	23.5	-20.9			5' arm      3' arm
29219	+	128683	89	20	-20.9			5' arm      3' arm
29280	-	32494	89	22.5	-20.9	YP_068136		5' arm      3' arm
29223	+	132982	89	21	-20.9	YP_068225		5' arm      3' arm
29218	+	128593	89	22	-21			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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