miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
19548987 NC_003444.1 Shigella flexneri bacteriophage V

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13548 + 7658 87 21 -25.7 NP_599043 5' arm      3' arm
13547 + 7538 89 24.5 -22.64 NP_599043 5' arm      3' arm
13546 + 7126 86 20 -21.4 NP_599041 5' arm      3' arm
13545 + 6330 90 20.5 -25.7 NP_599040 5' arm      3' arm
13544 + 4771 88 22 -25.7 NP_599037 5' arm      3' arm
13543 + 3404 90 19.5 -21.7 NP_599035 5' arm      3' arm
13542 + 1582 87 21.5 -21 NP_599034 5' arm      3' arm
13541 + 1134 90 21.5 -20.2 NP_599034 5' arm      3' arm
13540 + 961 89 21.5 -23.24 NP_599034 5' arm      3' arm
13539 + 765 90 19.5 -22.9 NP_599034 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.