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| GenBank Identifier | RefSeq Acc. | Name |
| 19548987 | NC_003444.1 | Shigella flexneri bacteriophage V |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13542 | + | 1582 | 87 | 21.5 | -21 | NP_599034 | 5' arm 3' arm | ||
| 13584 | - | 24866 | 87 | 19 | -20.9 | 5' arm 3' arm | |||
| 13570 | + | 36385 | 88 | 19 | -20.9 | NP_599084 | 5' arm 3' arm | ||
| 13558 | + | 16447 | 85 | 19.5 | -20.81 | NP_599052 | 5' arm 3' arm | ||
| 13576 | - | 8822 | 87 | 20.5 | -20.6 | NP_599043 | 5' arm 3' arm | ||
| 13551 | + | 12855 | 84 | 21.5 | -20.5 | NP_599047 | 5' arm 3' arm | ||
| 13541 | + | 1134 | 90 | 21.5 | -20.2 | NP_599034 | 5' arm 3' arm | ||
| 13552 | + | 13183 | 89 | 25.5 | -20 | NP_599048 | 5' arm 3' arm | ||
| 13567 | + | 32417 | 90 | 19 | -19.65 | NP_599077 | 5' arm 3' arm | ||
| 13553 | + | 14250 | 90 | 22.5 | -19.6 | NP_599049 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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