miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13559	+	16762	90	20	-23.1	NP_599053		5' arm      3' arm
13579	-	12477	89	22.5	-23	NP_599047		5' arm      3' arm
13557	+	16280	90	19	-23	NP_599052		5' arm      3' arm
13586	-	34168	88	19.5	-23			5' arm      3' arm
13539	+	765	90	19.5	-22.9	NP_599034		5' arm      3' arm
13554	+	15296	89	22	-22.7	NP_599051		5' arm      3' arm
13547	+	7538	89	24.5	-22.64	NP_599043		5' arm      3' arm
13563	+	28362	90	22.5	-22.5	NP_599071		5' arm      3' arm
13572	-	1223	90	23	-22.5	NP_599034		5' arm      3' arm
13564	+	28738	90	20.5	-22.2			5' arm      3' arm
13571	-	502	89	20.5	-22	NP_599033		5' arm      3' arm
13573	-	3194	90	19	-22	NP_599035		5' arm      3' arm
13581	-	13898	89	19	-22	NP_599048		5' arm      3' arm
13549	+	7993	89	19	-21.9	NP_599043		5' arm      3' arm
13543	+	3404	90	19.5	-21.7	NP_599035		5' arm      3' arm
13575	-	8604	85	20.5	-21.7	NP_599043		5' arm      3' arm
13585	-	28451	90	20.5	-21.7	NP_599071		5' arm      3' arm
13555	+	15454	89	24.5	-21.6	NP_599051		5' arm      3' arm
13588	-	36998	90	20	-21.4	NP_599085		5' arm      3' arm
13546	+	7126	86	20	-21.4	NP_599041		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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