miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
19548987 NC_003444.1 Shigella flexneri bacteriophage V

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13542 + 1582 87 21.5 -21 NP_599034 5' arm      3' arm
13539 + 765 90 19.5 -22.9 NP_599034 5' arm      3' arm
13543 + 3404 90 19.5 -21.7 NP_599035 5' arm      3' arm
13547 + 7538 89 24.5 -22.64 NP_599043 5' arm      3' arm
13550 + 8518 90 22 -31.3 NP_599043 5' arm      3' arm
13548 + 7658 87 21 -25.7 NP_599043 5' arm      3' arm
13555 + 15454 89 24.5 -21.6 NP_599051 5' arm      3' arm
13551 + 12855 84 21.5 -20.5 NP_599047 5' arm      3' arm
13552 + 13183 89 25.5 -20 NP_599048 5' arm      3' arm
13549 + 7993 89 19 -21.9 NP_599043 5' arm      3' arm
13546 + 7126 86 20 -21.4 NP_599041 5' arm      3' arm
13545 + 6330 90 20.5 -25.7 NP_599040 5' arm      3' arm
13579 - 12477 89 22.5 -23 NP_599047 5' arm      3' arm
13582 - 14181 87 19 -24.6 NP_599049 5' arm      3' arm
13583 - 14721 89 19 -23.2 NP_599050 5' arm      3' arm
13584 - 24866 87 19 -20.9 5' arm      3' arm
13585 - 28451 90 20.5 -21.7 NP_599071 5' arm      3' arm
13586 - 34168 88 19.5 -23 5' arm      3' arm
13588 - 36998 90 20 -21.4 NP_599085 5' arm      3' arm
13571 - 502 89 20.5 -22 NP_599033 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.