miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13564	+	28738	90	20.5	-22.2			5' arm      3' arm
13585	-	28451	90	20.5	-21.7	NP_599071		5' arm      3' arm
13571	-	502	89	20.5	-22	NP_599033		5' arm      3' arm
13576	-	8822	87	20.5	-20.6	NP_599043		5' arm      3' arm
13545	+	6330	90	20.5	-25.7	NP_599040		5' arm      3' arm
13575	-	8604	85	20.5	-21.7	NP_599043		5' arm      3' arm
13580	-	12612	87	20.5	-26.3	NP_599047		5' arm      3' arm
13574	-	8483	89	21	-26.3	NP_599043		5' arm      3' arm
13548	+	7658	87	21	-25.7	NP_599043		5' arm      3' arm
13578	-	9993	89	21	-27.2	NP_599046		5' arm      3' arm
13562	+	27567	89	21	-28.2	NP_599069		5' arm      3' arm
13551	+	12855	84	21.5	-20.5	NP_599047		5' arm      3' arm
13566	+	31968	89	21.5	-25.1	NP_599077		5' arm      3' arm
13540	+	961	89	21.5	-23.24	NP_599034		5' arm      3' arm
13541	+	1134	90	21.5	-20.2	NP_599034		5' arm      3' arm
13542	+	1582	87	21.5	-21	NP_599034		5' arm      3' arm
13544	+	4771	88	22	-25.7	NP_599037		5' arm      3' arm
13550	+	8518	90	22	-31.3	NP_599043		5' arm      3' arm
13554	+	15296	89	22	-22.7	NP_599051		5' arm      3' arm
13579	-	12477	89	22.5	-23	NP_599047		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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