miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
19548987 NC_003444.1 Shigella flexneri bacteriophage V

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13550 + 8518 90 22 -31.3 NP_599043 5' arm      3' arm
13547 + 7538 89 24.5 -22.64 NP_599043 5' arm      3' arm
13549 + 7993 89 19 -21.9 NP_599043 5' arm      3' arm
13577 - 9471 90 19 -23.6 NP_599045 5' arm      3' arm
13578 - 9993 89 21 -27.2 NP_599046 5' arm      3' arm
13579 - 12477 89 22.5 -23 NP_599047 5' arm      3' arm
13551 + 12855 84 21.5 -20.5 NP_599047 5' arm      3' arm
13580 - 12612 87 20.5 -26.3 NP_599047 5' arm      3' arm
13581 - 13898 89 19 -22 NP_599048 5' arm      3' arm
13552 + 13183 89 25.5 -20 NP_599048 5' arm      3' arm
13582 - 14181 87 19 -24.6 NP_599049 5' arm      3' arm
13553 + 14250 90 22.5 -19.6 NP_599049 5' arm      3' arm
13583 - 14721 89 19 -23.2 NP_599050 5' arm      3' arm
13554 + 15296 89 22 -22.7 NP_599051 5' arm      3' arm
13555 + 15454 89 24.5 -21.6 NP_599051 5' arm      3' arm
13556 + 15775 90 19.5 -26 NP_599051 5' arm      3' arm
13557 + 16280 90 19 -23 NP_599052 5' arm      3' arm
13558 + 16447 85 19.5 -20.81 NP_599052 5' arm      3' arm
13559 + 16762 90 20 -23.1 NP_599053 5' arm      3' arm
13561 + 27143 87 19 -25.7 NP_599068 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.