miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9633396 NC_000902.1 Bacteriophage VT2-Sa provirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
995 - 60762 89 23.5 -27.6 5' arm      3' arm
994 - 54075 90 23 -19.6 NP_050570 5' arm      3' arm
993 - 50757 87 21.5 -25 NP_050570 5' arm      3' arm
992 - 50508 89 19 -20.52 NP_050570 5' arm      3' arm
991 - 49513 88 23 -30.7 NP_050570 5' arm      3' arm
990 - 40607 89 23.5 -29.31 NP_050560 5' arm      3' arm
989 - 38198 88 19.5 -21 NP_050557 5' arm      3' arm
988 - 37827 90 19 -21.5 NP_050557 5' arm      3' arm
987 - 37540 90 21 -21 NP_050557 5' arm      3' arm
986 - 27421 90 20.5 -24.1 NP_050546 5' arm      3' arm
985 - 24309 86 20 -26.3 NP_050541 5' arm      3' arm
984 - 23980 89 19.5 -21.81 NP_050541 5' arm      3' arm
983 - 16147 88 21.5 -20 NP_050530 5' arm      3' arm
982 - 14370 90 20 -20.5 NP_050526 5' arm      3' arm
981 - 9240 87 23 -26.2 NP_050520 5' arm      3' arm
980 - 7461 89 20 -22.9 NP_050514 5' arm      3' arm
979 - 5819 88 19 -19.8 NP_050511 5' arm      3' arm
978 - 4157 90 20 -21.1 NP_050508 5' arm      3' arm
977 + 60405 90 24 -23.8 5' arm      3' arm
976 + 57703 86 24 -29.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.