miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
975	+	55657	89	28.5	-19.6	NP_050570		5' arm      3' arm
968	+	48428	90	20.5	-20.4	NP_050570		5' arm      3' arm
971	+	50326	88	19.5	-21.3	NP_050570		5' arm      3' arm
972	+	51169	88	23	-24.5	NP_050570		5' arm      3' arm
992	-	50508	89	19	-20.52	NP_050570		5' arm      3' arm
993	-	50757	87	21.5	-25	NP_050570		5' arm      3' arm
970	+	50156	82	19	-20.8	NP_050570		5' arm      3' arm
991	-	49513	88	23	-30.7	NP_050570		5' arm      3' arm
994	-	54075	90	23	-19.6	NP_050570		5' arm      3' arm
973	+	55240	86	20.5	-31.6	NP_050570		5' arm      3' arm
974	+	55438	90	23.5	-28.2	NP_050570		5' arm      3' arm
969	+	49049	82	20	-22	NP_050570		5' arm      3' arm
967	+	46649	84	23.5	-23.6	NP_050568		5' arm      3' arm
966	+	45859	89	20	-23.4	NP_050566		5' arm      3' arm
964	+	41933	90	19.5	-21.5	NP_050561		5' arm      3' arm
963	+	41568	90	21	-20.6	NP_050561		5' arm      3' arm
962	+	40036	89	20.5	-21.2	NP_050560		5' arm      3' arm
990	-	40607	89	23.5	-29.31	NP_050560		5' arm      3' arm
961	+	37201	87	22	-26	NP_050557		5' arm      3' arm
989	-	38198	88	19.5	-21	NP_050557		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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