miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
972	+	51169	88	23	-24.5	NP_050570		5' arm      3' arm
960	+	35852	89	23	-24.2	NP_050555		5' arm      3' arm
986	-	27421	90	20.5	-24.1	NP_050546		5' arm      3' arm
959	+	33303	88	23	-24	NP_050551		5' arm      3' arm
977	+	60405	90	24	-23.8			5' arm      3' arm
967	+	46649	84	23.5	-23.6	NP_050568		5' arm      3' arm
966	+	45859	89	20	-23.4	NP_050566		5' arm      3' arm
980	-	7461	89	20	-22.9	NP_050514		5' arm      3' arm
969	+	49049	82	20	-22	NP_050570		5' arm      3' arm
956	+	25484	85	21.5	-21.9			5' arm      3' arm
984	-	23980	89	19.5	-21.81	NP_050541		5' arm      3' arm
988	-	37827	90	19	-21.5	NP_050557		5' arm      3' arm
964	+	41933	90	19.5	-21.5	NP_050561		5' arm      3' arm
971	+	50326	88	19.5	-21.3	NP_050570		5' arm      3' arm
962	+	40036	89	20.5	-21.2	NP_050560		5' arm      3' arm
978	-	4157	90	20	-21.1	NP_050508		5' arm      3' arm
989	-	38198	88	19.5	-21	NP_050557		5' arm      3' arm
987	-	37540	90	21	-21	NP_050557		5' arm      3' arm
954	+	24772	90	20	-20.8	NP_050542		5' arm      3' arm
970	+	50156	82	19	-20.8	NP_050570		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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