miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
986	-	27421	90	20.5	-24.1	NP_050546		5' arm      3' arm
987	-	37540	90	21	-21	NP_050557		5' arm      3' arm
963	+	41568	90	21	-20.6	NP_050561		5' arm      3' arm
993	-	50757	87	21.5	-25	NP_050570		5' arm      3' arm
950	+	13949	89	21.5	-26.6	NP_050526		5' arm      3' arm
951	+	16260	89	21.5	-24.7	NP_050530		5' arm      3' arm
949	+	9862	87	21.5	-25.9	NP_050521		5' arm      3' arm
983	-	16147	88	21.5	-20	NP_050530		5' arm      3' arm
956	+	25484	85	21.5	-21.9			5' arm      3' arm
957	+	25640	86	21.5	-24.9	NP_050544		5' arm      3' arm
961	+	37201	87	22	-26	NP_050557		5' arm      3' arm
953	+	19750	87	22.5	-27.1	NP_050538		5' arm      3' arm
960	+	35852	89	23	-24.2	NP_050555		5' arm      3' arm
959	+	33303	88	23	-24	NP_050551		5' arm      3' arm
958	+	32479	89	23	-29.7			5' arm      3' arm
991	-	49513	88	23	-30.7	NP_050570		5' arm      3' arm
994	-	54075	90	23	-19.6	NP_050570		5' arm      3' arm
972	+	51169	88	23	-24.5	NP_050570		5' arm      3' arm
981	-	9240	87	23	-26.2	NP_050520		5' arm      3' arm
974	+	55438	90	23.5	-28.2	NP_050570		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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