miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 7449 1.09 0.010539
Target:  5'- gCACCGAACGAGAAGCAGACGAGCAUGa -3'
miRNA:   3'- -GUGGCUUGCUCUUCGUCUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 146104 0.7 0.94801
Target:  5'- aCGCCGucgGAGAAGaucucGACGGGCGUGa -3'
miRNA:   3'- -GUGGCuugCUCUUCgu---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 149816 0.7 0.95983
Target:  5'- gUACCcGACGAGcgcGAGuCGGACGAGCGc- -3'
miRNA:   3'- -GUGGcUUGCUC---UUC-GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 125381 0.66 0.996354
Target:  5'- gGCUGGGCGAcGgcGCGGugGuGCcgGc -3'
miRNA:   3'- gUGGCUUGCU-CuuCGUCugCuCGuaC- -5'
15666 3' -52 NC_004065.1 + 130909 0.75 0.780051
Target:  5'- uGCCG-ACGuuGGGCAuGACGGGCGUGg -3'
miRNA:   3'- gUGGCuUGCucUUCGU-CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 186016 0.75 0.788354
Target:  5'- gAUCGAGCGAGcgagcgaacgaccGGGCGGGCGGGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-------------UUCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 150743 0.73 0.84934
Target:  5'- gGCCGAGCGGGAgaaGGCGGuCGAuGCGg- -3'
miRNA:   3'- gUGGCUUGCUCU---UCGUCuGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 150325 0.73 0.864836
Target:  5'- aGCUGAugGAGAAGCgGGACcGGCAg- -3'
miRNA:   3'- gUGGCUugCUCUUCG-UCUGcUCGUac -5'
15666 3' -52 NC_004065.1 + 87218 0.71 0.912185
Target:  5'- -uCUGGGCGAGggGCGcuucgggggcGACGAGCGa- -3'
miRNA:   3'- guGGCUUGCUCuuCGU----------CUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 211353 0.7 0.94801
Target:  5'- aACCGAgGCGAGAcGGCGGGC-AGCAg- -3'
miRNA:   3'- gUGGCU-UGCUCU-UCGUCUGcUCGUac -5'
15666 3' -52 NC_004065.1 + 107041 0.7 0.938968
Target:  5'- aACUGAACGAGAgcAGCGuGGCGAGaCGg- -3'
miRNA:   3'- gUGGCUUGCUCU--UCGU-CUGCUC-GUac -5'
15666 3' -52 NC_004065.1 + 126579 0.71 0.912185
Target:  5'- aCACgGugggcGGCGGGGAGCGccuGGCGGGCGUGa -3'
miRNA:   3'- -GUGgC-----UUGCUCUUCGU---CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 149441 0.77 0.641204
Target:  5'- gGCCGAGCGAGcGGauCGGACGAGCGc- -3'
miRNA:   3'- gUGGCUUGCUCuUC--GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 19132 0.7 0.94801
Target:  5'- gGCCGuucgGgGGGGAGCGGGCGuGCcgGg -3'
miRNA:   3'- gUGGCu---UgCUCUUCGUCUGCuCGuaC- -5'
15666 3' -52 NC_004065.1 + 116344 0.76 0.702288
Target:  5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 34615 0.72 0.906111
Target:  5'- aGCCGAGCGgcGGAGGguGGCGuGCuUGc -3'
miRNA:   3'- gUGGCUUGC--UCUUCguCUGCuCGuAC- -5'
15666 3' -52 NC_004065.1 + 222979 0.7 0.94801
Target:  5'- -cCCGGGCGAGGAGCuccuGACGAucgaGCcgGu -3'
miRNA:   3'- guGGCUUGCUCUUCGu---CUGCU----CGuaC- -5'
15666 3' -52 NC_004065.1 + 111505 0.7 0.952179
Target:  5'- gCGCCG-ACGA--GGCAGAggcgauCGAGCGUGa -3'
miRNA:   3'- -GUGGCuUGCUcuUCGUCU------GCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 94339 0.76 0.735096
Target:  5'- gCGCCGAgcgaaagGCGAGAGGCAGAgcaaaagcggagcguCGAGCGg- -3'
miRNA:   3'- -GUGGCU-------UGCUCUUCGUCU---------------GCUCGUac -5'
15666 3' -52 NC_004065.1 + 146385 0.73 0.84934
Target:  5'- uGCgGAugGAGAAGguGAUGucGCGUGa -3'
miRNA:   3'- gUGgCUugCUCUUCguCUGCu-CGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.