miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 101814 0.7 0.993159
Target:  5'- aCUuCGGCGGUGGCGGG-ACuGGCACu -3'
miRNA:   3'- -GAuGCUGCUAUCGUCUaUGcUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 24543 0.72 0.974161
Target:  5'- -gACGACGGcAGCGGAgACGAGCcccuCGu -3'
miRNA:   3'- gaUGCUGCUaUCGUCUaUGCUCGu---GC- -5'
15667 3' -49.4 NC_004065.1 + 168069 0.72 0.976726
Target:  5'- uUGCGGCGAacucgcgcgAGUAGAUGCGGGUGuCGa -3'
miRNA:   3'- gAUGCUGCUa--------UCGUCUAUGCUCGU-GC- -5'
15667 3' -49.4 NC_004065.1 + 59150 0.71 0.983298
Target:  5'- -gGCGACGAcGGCgAGAguccgauCGGGCGCGc -3'
miRNA:   3'- gaUGCUGCUaUCG-UCUau-----GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 150345 0.71 0.985142
Target:  5'- ---gGugGAU-GCGGAUGuCGGGCACGu -3'
miRNA:   3'- gaugCugCUAuCGUCUAU-GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 23563 0.71 0.986826
Target:  5'- aUGCgGGCGGgcgGGCAGGcagGCGGGCugGu -3'
miRNA:   3'- gAUG-CUGCUa--UCGUCUa--UGCUCGugC- -5'
15667 3' -49.4 NC_004065.1 + 172325 0.7 0.98836
Target:  5'- -gACGACGGU-GCAGAU-C-AGCGCGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUAuGcUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 128449 0.7 0.989752
Target:  5'- -cGCGGCGGaGGCGuccGCGGGCGCGa -3'
miRNA:   3'- gaUGCUGCUaUCGUcuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 75480 0.7 0.992142
Target:  5'- -gAgGGCGAUGGCGGcgGCGAGgAUc -3'
miRNA:   3'- gaUgCUGCUAUCGUCuaUGCUCgUGc -5'
15667 3' -49.4 NC_004065.1 + 175455 0.72 0.965246
Target:  5'- -cACGGCGA-AGCacaGGAggcUGCGAGCACGc -3'
miRNA:   3'- gaUGCUGCUaUCG---UCU---AUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 53757 0.73 0.945949
Target:  5'- -gAUGACGAU-GCAGAUcacuGCGAGgACGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUA----UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 152302 0.74 0.936575
Target:  5'- cCUGCGGCGGcGGCGGugccgGCGGGgACGa -3'
miRNA:   3'- -GAUGCUGCUaUCGUCua---UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 35522 0.79 0.734264
Target:  5'- -gGCGACGGaGGUGGggACGGGCACGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 127241 0.78 0.800974
Target:  5'- -gGCG-CGGUGGCGGGgaugAUGAGCGCGa -3'
miRNA:   3'- gaUGCuGCUAUCGUCUa---UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 88719 0.77 0.844116
Target:  5'- -cGCGGCGcgAGCGGcggAUGAGCACGu -3'
miRNA:   3'- gaUGCUGCuaUCGUCua-UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 61710 0.77 0.844116
Target:  5'- -cGCGGCGuagcGGCGGAUGCGAGCcauGCGc -3'
miRNA:   3'- gaUGCUGCua--UCGUCUAUGCUCG---UGC- -5'
15667 3' -49.4 NC_004065.1 + 48108 0.76 0.860045
Target:  5'- -gGCGGCGGUGGCGGcgGCGGugggaccucgcGCACGu -3'
miRNA:   3'- gaUGCUGCUAUCGUCuaUGCU-----------CGUGC- -5'
15667 3' -49.4 NC_004065.1 + 200787 0.76 0.874396
Target:  5'- -cGCGGCGGUGGCGGGcgACGgcgucucGGCGCGg -3'
miRNA:   3'- gaUGCUGCUAUCGUCUa-UGC-------UCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 61664 0.75 0.90886
Target:  5'- ---aGACGAUGGCGGuguaGAGCGCGa -3'
miRNA:   3'- gaugCUGCUAUCGUCuaugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 74863 0.74 0.936575
Target:  5'- -gGCGGCGGUGGUAGA--CGGGCAgGu -3'
miRNA:   3'- gaUGCUGCUAUCGUCUauGCUCGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.