miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 5' -60.8 NC_004778.3 + 95779 0.66 0.68308
Target:  5'- cGCGCGGCagcgCGCCGgCCGcGCugcGCCc -3'
miRNA:   3'- aCGCGUCGaacaGCGGC-GGC-CGc--UGG- -5'
21208 5' -60.8 NC_004778.3 + 85281 0.66 0.68308
Target:  5'- cGCGUccauGCc-GUCGCCGCCGcaaacgcccGCGuCCa -3'
miRNA:   3'- aCGCGu---CGaaCAGCGGCGGC---------CGCuGG- -5'
21208 5' -60.8 NC_004778.3 + 117352 0.66 0.68308
Target:  5'- uUGCGCAGCcgcauaGCUGCUaaGGCGGgCg -3'
miRNA:   3'- -ACGCGUCGaacag-CGGCGG--CCGCUgG- -5'
21208 5' -60.8 NC_004778.3 + 8218 0.66 0.68308
Target:  5'- cGcCGCAGUUUGUgGaCGUUaGCGACCu -3'
miRNA:   3'- aC-GCGUCGAACAgCgGCGGcCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 90877 0.66 0.68308
Target:  5'- uUGCGCGGCauacUGUCGUaCGCCacguucgacuGCGACg -3'
miRNA:   3'- -ACGCGUCGa---ACAGCG-GCGGc---------CGCUGg -5'
21208 5' -60.8 NC_004778.3 + 102233 0.66 0.682089
Target:  5'- aGCGCGGCag--CGaacuuuugcugaaCCGCCGGgGACa -3'
miRNA:   3'- aCGCGUCGaacaGC-------------GGCGGCCgCUGg -5'
21208 5' -60.8 NC_004778.3 + 24960 0.66 0.680105
Target:  5'- cGuCGCAGUaaaaacauuugacuUUGUCGCUacgGCCGGUGuaaaagaaGCCa -3'
miRNA:   3'- aC-GCGUCG--------------AACAGCGG---CGGCCGC--------UGG- -5'
21208 5' -60.8 NC_004778.3 + 49021 0.66 0.67315
Target:  5'- gGUGCGGCUgg-CGCCGUacuuugacGCGAUCa -3'
miRNA:   3'- aCGCGUCGAacaGCGGCGgc------CGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 45330 0.66 0.67315
Target:  5'- gUGUGC-GC---UCGCCGCCGGUguuGACa -3'
miRNA:   3'- -ACGCGuCGaacAGCGGCGGCCG---CUGg -5'
21208 5' -60.8 NC_004778.3 + 127754 0.66 0.67315
Target:  5'- aUGCGCcuGCUcG-CGCUGCUGGcCGcACCc -3'
miRNA:   3'- -ACGCGu-CGAaCaGCGGCGGCC-GC-UGG- -5'
21208 5' -60.8 NC_004778.3 + 120401 0.66 0.672155
Target:  5'- aGCGCGGCgguuaacUUGUgcgaCGgCGCCuGCGACa -3'
miRNA:   3'- aCGCGUCG-------AACA----GCgGCGGcCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 43988 0.66 0.663187
Target:  5'- cGCGCcGCccaacgCGCgGCCGGCGGgUa -3'
miRNA:   3'- aCGCGuCGaaca--GCGgCGGCCGCUgG- -5'
21208 5' -60.8 NC_004778.3 + 9358 0.66 0.663187
Target:  5'- cGCGCguaccuauGGUUUGUCuGCCcaugaUgGGCGACCa -3'
miRNA:   3'- aCGCG--------UCGAACAG-CGGc----GgCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 126867 0.66 0.660194
Target:  5'- uUGCGCAcGUUuuucagcaagguaaUGUCGUuguacUGCUGGCGGCg -3'
miRNA:   3'- -ACGCGU-CGA--------------ACAGCG-----GCGGCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 37809 0.66 0.653201
Target:  5'- cGCGCGGUUgggCGUcucaaacagCGCgCGGCGACa -3'
miRNA:   3'- aCGCGUCGAacaGCG---------GCG-GCCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 2021 0.66 0.653201
Target:  5'- cGCGUcgaAGCUgcucucgGUCGuaGUCGGCcGCCa -3'
miRNA:   3'- aCGCG---UCGAa------CAGCggCGGCCGcUGG- -5'
21208 5' -60.8 NC_004778.3 + 92888 0.66 0.653201
Target:  5'- gGCGUccAGCUUGagcCGCagcgaGCCGGCGuCg -3'
miRNA:   3'- aCGCG--UCGAACa--GCGg----CGGCCGCuGg -5'
21208 5' -60.8 NC_004778.3 + 66701 0.66 0.653201
Target:  5'- aGCaGUAGCgccaUGUCGCuUGCCaagacgGGCGACg -3'
miRNA:   3'- aCG-CGUCGa---ACAGCG-GCGG------CCGCUGg -5'
21208 5' -60.8 NC_004778.3 + 112640 0.66 0.653201
Target:  5'- uUGCGC-GCg---CGCUGUucgauaUGGCGACCa -3'
miRNA:   3'- -ACGCGuCGaacaGCGGCG------GCCGCUGG- -5'
21208 5' -60.8 NC_004778.3 + 91036 0.66 0.653201
Target:  5'- gUGCGCGGUcUGgugaagaucgUGCaCGCCGcCGACCc -3'
miRNA:   3'- -ACGCGUCGaACa---------GCG-GCGGCcGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.