miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21210 3' -62.5 NC_004778.3 + 121900 0.66 0.619862
Target:  5'- cGCGUGcugGGCGCUCugAgCACAuuugugaaccCCGCCGg -3'
miRNA:   3'- -CGCACca-CCGCGGG--UgGUGU----------GGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 92756 0.66 0.619862
Target:  5'- aGCGcGGUGuuGCCCACgGC-CgGCCu -3'
miRNA:   3'- -CGCaCCACcgCGGGUGgUGuGgCGGc -5'
21210 3' -62.5 NC_004778.3 + 90558 0.66 0.618878
Target:  5'- -aGUGGcaGCGCUCGCCgccgagcGCAgCGCCGa -3'
miRNA:   3'- cgCACCacCGCGGGUGG-------UGUgGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 125373 0.66 0.615927
Target:  5'- aCGUGGgacccaucaggcaGGCGCUCgGCCuGC-CCGCCGg -3'
miRNA:   3'- cGCACCa------------CCGCGGG-UGG-UGuGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 85274 0.66 0.610029
Target:  5'- ------cGGCGCCCgcguccauGCCGuCGCCGCCGc -3'
miRNA:   3'- cgcaccaCCGCGGG--------UGGU-GUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 121140 0.66 0.610029
Target:  5'- aGCGUGGUgacuauaagcuGGCGUggGCaGCACCGCUa -3'
miRNA:   3'- -CGCACCA-----------CCGCGggUGgUGUGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 107147 0.66 0.609047
Target:  5'- uCGuUGGUGGCgggcgcgcaaauuGCCCACucguuucggcuCACugCGCCa -3'
miRNA:   3'- cGC-ACCACCG-------------CGGGUG-----------GUGugGCGGc -5'
21210 3' -62.5 NC_004778.3 + 95993 0.66 0.590416
Target:  5'- uGCGgacGGccGCGCUUuUCGCGCCGCCGc -3'
miRNA:   3'- -CGCa--CCacCGCGGGuGGUGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 21500 0.66 0.580649
Target:  5'- ---cGGaUGGCGCcgCCACCGC-CgGCCGa -3'
miRNA:   3'- cgcaCC-ACCGCG--GGUGGUGuGgCGGC- -5'
21210 3' -62.5 NC_004778.3 + 60165 0.66 0.580649
Target:  5'- uCGUGGUucauuaaGCGCgCCACCuuuugcaacggcACGCCGCUGu -3'
miRNA:   3'- cGCACCAc------CGCG-GGUGG------------UGUGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 57758 0.66 0.580649
Target:  5'- ---aGGUcGaCGCCCGCCGCGCCaagcGCCa -3'
miRNA:   3'- cgcaCCAcC-GCGGGUGGUGUGG----CGGc -5'
21210 3' -62.5 NC_004778.3 + 42507 0.66 0.580649
Target:  5'- gGCGUGGUcGGCguGCCCGacaaCGgGCUGCUc -3'
miRNA:   3'- -CGCACCA-CCG--CGGGUg---GUgUGGCGGc -5'
21210 3' -62.5 NC_004778.3 + 15480 0.66 0.577725
Target:  5'- cGCGUGuGUGGaugcuguacgucauCGUgCGCCAU-CCGCCGc -3'
miRNA:   3'- -CGCAC-CACC--------------GCGgGUGGUGuGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 18501 0.66 0.570916
Target:  5'- aUGgGGUGGCGCCCGCCu--CCaGCa- -3'
miRNA:   3'- cGCaCCACCGCGGGUGGuguGG-CGgc -5'
21210 3' -62.5 NC_004778.3 + 39550 0.67 0.565094
Target:  5'- cGCGcaagccgcuuGCGCCCACCACGCUGCa- -3'
miRNA:   3'- -CGCaccac-----CGCGGGUGGUGUGGCGgc -5'
21210 3' -62.5 NC_004778.3 + 72436 0.67 0.551575
Target:  5'- aGUGUaGGcGGCaaacucgccugGCCCGCCGCACagguccagCGCCGu -3'
miRNA:   3'- -CGCA-CCaCCG-----------CGGGUGGUGUG--------GCGGC- -5'
21210 3' -62.5 NC_004778.3 + 120639 0.67 0.551575
Target:  5'- cGC-UGagcGCGCCCGCCGCcucGCCGCUGa -3'
miRNA:   3'- -CGcACcacCGCGGGUGGUG---UGGCGGC- -5'
21210 3' -62.5 NC_004778.3 + 95779 0.67 0.541978
Target:  5'- cGCGcGGcagcGCGCCgGCCGCGCUGCg- -3'
miRNA:   3'- -CGCaCCac--CGCGGgUGGUGUGGCGgc -5'
21210 3' -62.5 NC_004778.3 + 61959 0.67 0.541021
Target:  5'- cGCGUucucgaacaugucGG-GGCGCUUGCCGCugCGCg- -3'
miRNA:   3'- -CGCA-------------CCaCCGCGGGUGGUGugGCGgc -5'
21210 3' -62.5 NC_004778.3 + 26560 0.67 0.532438
Target:  5'- aGCGUGGU-GCGCaCgGCCGCAUaguUGUCGu -3'
miRNA:   3'- -CGCACCAcCGCG-GgUGGUGUG---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.