miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 66080 0.66 0.759998
Target:  5'- aCGcGgCCGcGgCGGCGGAGGcgcUGUGCg -3'
miRNA:   3'- gGCaCgGGUuCgGCCGCCUCU---ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 33189 0.66 0.759998
Target:  5'- gCCGgacggGCCCucccgaCGGCGGGGc-GCGCc -3'
miRNA:   3'- -GGCa----CGGGuucg--GCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 127247 0.66 0.759998
Target:  5'- aCGUGCUC-GGCCugauGCuGGAGGcggGCGCg -3'
miRNA:   3'- gGCACGGGuUCGGc---CG-CCUCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 95903 0.66 0.759998
Target:  5'- cUCGUGCUCGcGGCgaCGGCGGccgcGCGCg -3'
miRNA:   3'- -GGCACGGGU-UCG--GCCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 99627 0.66 0.759998
Target:  5'- gUCGUGCgCGuGCgGGacaCGGAcGUGCGCg -3'
miRNA:   3'- -GGCACGgGUuCGgCC---GCCUcUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 18434 0.66 0.759068
Target:  5'- gCCGcuccGCCUugagcacgggcggGGGaCUGGCGGGGAguccGCGCg -3'
miRNA:   3'- -GGCa---CGGG-------------UUC-GGCCGCCUCUa---CGCG- -5'
25699 3' -59.7 NC_005337.1 + 76010 0.66 0.7544
Target:  5'- gCCGUGCgCCGGuacacgcggaagaccGCCGcGcCGGAcuUGCGCu -3'
miRNA:   3'- -GGCACG-GGUU---------------CGGC-C-GCCUcuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 4653 0.66 0.751586
Target:  5'- cCCGgcgGCCaCGAGCCGcCGGAcGAgcuccacggucgcucGCGCg -3'
miRNA:   3'- -GGCa--CGG-GUUCGGCcGCCU-CUa--------------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 101246 0.66 0.750647
Target:  5'- gCGUGCUCGcGCUGGaCGGcGcgGaCGCg -3'
miRNA:   3'- gGCACGGGUuCGGCC-GCCuCuaC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 2826 0.66 0.750647
Target:  5'- ---aGCCCAGGCCGagcgcggccuccGCGGAGAcggagucCGCg -3'
miRNA:   3'- ggcaCGGGUUCGGC------------CGCCUCUac-----GCG- -5'
25699 3' -59.7 NC_005337.1 + 16620 0.66 0.750647
Target:  5'- gCGUGCCCGacuucuucgAGCgcuccaccaCGGCGGuGAcGCGg -3'
miRNA:   3'- gGCACGGGU---------UCG---------GCCGCCuCUaCGCg -5'
25699 3' -59.7 NC_005337.1 + 99401 0.66 0.750647
Target:  5'- gCCGgugcUGCgCAccGCgGGCGGcGGGUGCGUg -3'
miRNA:   3'- -GGC----ACGgGUu-CGgCCGCC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 111544 0.66 0.750647
Target:  5'- gCGUGCagguCgGGGUCGGCGGugccguagacgAGGUGCGa -3'
miRNA:   3'- gGCACG----GgUUCGGCCGCC-----------UCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 20156 0.66 0.750647
Target:  5'- aCGcUGCCgCAGGCCgcGGCGGAGGccacgaagcucuUGaCGUu -3'
miRNA:   3'- gGC-ACGG-GUUCGG--CCGCCUCU------------AC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 84029 0.66 0.750647
Target:  5'- gCG-GCgggaCAcaCCGGCGGAGgcGCGCa -3'
miRNA:   3'- gGCaCGg---GUucGGCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 23915 0.66 0.741195
Target:  5'- gCCGcgcGCCCGcgcGCCcGCGGcAGgcGCGCg -3'
miRNA:   3'- -GGCa--CGGGUu--CGGcCGCC-UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 43831 0.66 0.741195
Target:  5'- aCGcUGCagCGGGCCGGCGGcGcgGUGg -3'
miRNA:   3'- gGC-ACGg-GUUCGGCCGCCuCuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 52475 0.66 0.741195
Target:  5'- gCCGcggcGCCCGcgagAGCCGGCuc--AUGCGCg -3'
miRNA:   3'- -GGCa---CGGGU----UCGGCCGccucUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 77145 0.66 0.740245
Target:  5'- aCGgcGUCCAGGCUGGCGGcgaccacgGGGUacugccgGCGCc -3'
miRNA:   3'- gGCa-CGGGUUCGGCCGCC--------UCUA-------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 81495 0.66 0.740245
Target:  5'- uCCGUGUUCAcgcgguuGGaCCGGauauCGGAGAUGaGCa -3'
miRNA:   3'- -GGCACGGGU-------UC-GGCC----GCCUCUACgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.