Results 1 - 20 of 162 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 18560 | 0.65 | 0.560122 |
Target: 5'- gGCGCGGCGgcgaauCCGAacccgUUCGUgcaacaaacgaccgGCGCGGCa -3' miRNA: 3'- -CGUGCCGU------GGCUg----AAGCG--------------CGCGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 44373 | 0.66 | 0.510866 |
Target: 5'- cGCA-GGCGcCCGACUgggcgaauacgaUCGC-CGCGAUg -3' miRNA: 3'- -CGUgCCGU-GGCUGA------------AGCGcGCGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 39365 | 0.66 | 0.510866 |
Target: 5'- uCGC-GCAUCGGCUUCGUGCaucGCGAa- -3' miRNA: 3'- cGUGcCGUGGCUGAAGCGCG---CGCUga -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 39070 | 0.66 | 0.510866 |
Target: 5'- cGCGuCGcGCAUCGACgccaaccUCGCcaagaucaagguGCGCGGCUa -3' miRNA: 3'- -CGU-GC-CGUGGCUGa------AGCG------------CGCGCUGA- -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 41571 | 0.66 | 0.510866 |
Target: 5'- cGUACGGCA-CGACcgcaugCGCGUGgGAUUc -3' miRNA: 3'- -CGUGCCGUgGCUGaa----GCGCGCgCUGA- -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 28521 | 0.66 | 0.510866 |
Target: 5'- ---aGGCGCUGGCa-CGCGCGUGAa- -3' miRNA: 3'- cgugCCGUGGCUGaaGCGCGCGCUga -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 17845 | 0.66 | 0.510866 |
Target: 5'- gGUcCGGCGCCGgucGCUUCGaCGUuCGGCa -3' miRNA: 3'- -CGuGCCGUGGC---UGAAGC-GCGcGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 21438 | 0.66 | 0.509836 |
Target: 5'- cGCACcugucggcGCGCCgGACUUCaucgacggaaaugGCGUGCGGCa -3' miRNA: 3'- -CGUGc-------CGUGG-CUGAAG-------------CGCGCGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 18172 | 0.66 | 0.506753 |
Target: 5'- uGC-CGGCguGCCGGgUgaugcgcucgucgUGCGCGCGGCa -3' miRNA: 3'- -CGuGCCG--UGGCUgAa------------GCGCGCGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 36686 | 0.66 | 0.522246 |
Target: 5'- gGCgACGGCGCaguucaacaGCGCGCGGCa -3' miRNA: 3'- -CG-UGCCGUGgcugaag--CGCGCGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 9546 | 0.66 | 0.531629 |
Target: 5'- -gGCGGCugCGGgaaUUUCaGCGCgGCGGCc -3' miRNA: 3'- cgUGCCGugGCU---GAAG-CGCG-CGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 43238 | 0.66 | 0.531629 |
Target: 5'- --uCGGUgaagGCCGGCgugcUCGCggGCGCGACg -3' miRNA: 3'- cguGCCG----UGGCUGa---AGCG--CGCGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 30905 | 0.66 | 0.55269 |
Target: 5'- gGCcCGGUucGCCGAUguucCG-GCGCGGCUg -3' miRNA: 3'- -CGuGCCG--UGGCUGaa--GCgCGCGCUGA- -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 43726 | 0.66 | 0.55269 |
Target: 5'- ---gGGCGCaCGAa--CGUGCGCGGCa -3' miRNA: 3'- cgugCCGUG-GCUgaaGCGCGCGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 27515 | 0.66 | 0.55269 |
Target: 5'- --cCGGCGCaGGCUUCGCGcCGCcGAa- -3' miRNA: 3'- cguGCCGUGgCUGAAGCGC-GCG-CUga -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 7192 | 0.66 | 0.542126 |
Target: 5'- -gGCGGCGCgaaacguguCGACgaUCGUGCGCGcCg -3' miRNA: 3'- cgUGCCGUG---------GCUGa-AGCGCGCGCuGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 36065 | 0.66 | 0.542126 |
Target: 5'- gGCGCGcGCGCCG-CUgcgcaugcCGgGCcGCGACg -3' miRNA: 3'- -CGUGC-CGUGGCuGAa-------GCgCG-CGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 36331 | 0.66 | 0.541073 |
Target: 5'- uGCGCgacuacuGGCAgcgcuacuUCGACacgUUCGCGCGCGAa- -3' miRNA: 3'- -CGUG-------CCGU--------GGCUG---AAGCGCGCGCUga -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 43866 | 0.66 | 0.541073 |
Target: 5'- cUACGGCAaauUCGACgaccugUCGCGCccgcucggcaaggGCGGCg -3' miRNA: 3'- cGUGCCGU---GGCUGa-----AGCGCG-------------CGCUGa -5' |
|||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 36823 | 0.66 | 0.532676 |
Target: 5'- aGguCGGCAUCGACUUCGgagauaaguucggcaGCGUG-CUa -3' miRNA: 3'- -CguGCCGUGGCUGAAGCg--------------CGCGCuGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home