Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26023 | 5' | -58.2 | NC_005342.2 | + | 46862 | 1.1 | 0.000416 |
Target: 5'- aGCACGGCACCGACUUCGCGCGCGACUg -3' miRNA: 3'- -CGUGCCGUGGCUGAAGCGCGCGCUGA- -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 12258 | 0.84 | 0.034863 |
Target: 5'- aCACGGCACCGGCggCGCGCauuGCGGCg -3' miRNA: 3'- cGUGCCGUGGCUGaaGCGCG---CGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 3079 | 0.83 | 0.038021 |
Target: 5'- aGCGCGGCcaguaucggGCCGACUUCGgGCGaCGACa -3' miRNA: 3'- -CGUGCCG---------UGGCUGAAGCgCGC-GCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 24675 | 0.79 | 0.074721 |
Target: 5'- aCGCGGCGCCGaucaGCUgcaugccgauccgCGCGCGCGACa -3' miRNA: 3'- cGUGCCGUGGC----UGAa------------GCGCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 14291 | 0.79 | 0.084369 |
Target: 5'- aGCGCGGCGCCGuucgccgcuuCUUCGauguagaCGCGCGACa -3' miRNA: 3'- -CGUGCCGUGGCu---------GAAGC-------GCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 3292 | 0.78 | 0.097353 |
Target: 5'- uGCGCGcGCaggauagcuGCCGACUUcuucggCGCGCGCGACg -3' miRNA: 3'- -CGUGC-CG---------UGGCUGAA------GCGCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 43122 | 0.78 | 0.100112 |
Target: 5'- gGCAgCGGCAUCGGCacggCGCGCGCGuACg -3' miRNA: 3'- -CGU-GCCGUGGCUGaa--GCGCGCGC-UGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 19568 | 0.77 | 0.102944 |
Target: 5'- gGCGCGGCACaaggGGaaUCGCGCGCGAUc -3' miRNA: 3'- -CGUGCCGUGg---CUgaAGCGCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 34091 | 0.77 | 0.111899 |
Target: 5'- cGCGCaGCccgugccgGCCGACUUCGCgcgGCGCGGCg -3' miRNA: 3'- -CGUGcCG--------UGGCUGAAGCG---CGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 9580 | 0.76 | 0.118268 |
Target: 5'- gGCGCGGCAUCGGCcggUUGCGCacCGGCUg -3' miRNA: 3'- -CGUGCCGUGGCUGa--AGCGCGc-GCUGA- -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 20951 | 0.75 | 0.139455 |
Target: 5'- cCACGGgGCgGACgcaaaCGCGCGCGGCg -3' miRNA: 3'- cGUGCCgUGgCUGaa---GCGCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 28708 | 0.75 | 0.147259 |
Target: 5'- uGCGCGGCcgccggAUCGGCgugugcgUCGCGUGCGGCc -3' miRNA: 3'- -CGUGCCG------UGGCUGa------AGCGCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 8963 | 0.75 | 0.159712 |
Target: 5'- uGCGCGGCGgCGACcgacgCGCGUucGCGGCUu -3' miRNA: 3'- -CGUGCCGUgGCUGaa---GCGCG--CGCUGA- -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 9170 | 0.74 | 0.168535 |
Target: 5'- cGCACGGCGCaCGAg-UCGCGCGU-ACUc -3' miRNA: 3'- -CGUGCCGUG-GCUgaAGCGCGCGcUGA- -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 8624 | 0.74 | 0.177791 |
Target: 5'- gGCGCGGCGcCCGGCUU-GCuCGUGACg -3' miRNA: 3'- -CGUGCCGU-GGCUGAAgCGcGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 36628 | 0.74 | 0.181136 |
Target: 5'- aGCGCGGCAaggugaCGACgaaccgcgccgccuUcaUCGCGCGCGACc -3' miRNA: 3'- -CGUGCCGUg-----GCUG--------------A--AGCGCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 30116 | 0.74 | 0.182587 |
Target: 5'- aGCGacCGGCGCCGGaccgaaUUCGCGCgccguaGCGACUg -3' miRNA: 3'- -CGU--GCCGUGGCUg-----AAGCGCG------CGCUGA- -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 27451 | 0.74 | 0.182587 |
Target: 5'- gGCGCGGCggcgGCCGGCagCGguUGCGCGGCa -3' miRNA: 3'- -CGUGCCG----UGGCUGaaGC--GCGCGCUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 38520 | 0.74 | 0.187497 |
Target: 5'- gGUGCGGCGcCCGcACUUgGCGCGCaaGACg -3' miRNA: 3'- -CGUGCCGU-GGC-UGAAgCGCGCG--CUGa -5' |
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26023 | 5' | -58.2 | NC_005342.2 | + | 22022 | 0.74 | 0.187497 |
Target: 5'- cGC-CGGCAUCGACgcCGCGCGCa--- -3' miRNA: 3'- -CGuGCCGUGGCUGaaGCGCGCGcuga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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