miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26023 5' -58.2 NC_005342.2 + 12258 0.84 0.034863
Target:  5'- aCACGGCACCGGCggCGCGCauuGCGGCg -3'
miRNA:   3'- cGUGCCGUGGCUGaaGCGCG---CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 15477 0.72 0.249529
Target:  5'- cGCgGCGGuCACCGGCggCGCgucaaGCGCGAUg -3'
miRNA:   3'- -CG-UGCC-GUGGCUGaaGCG-----CGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 13869 0.71 0.282932
Target:  5'- gGC-CGGCACgGGCUgCGCG-GCGGCc -3'
miRNA:   3'- -CGuGCCGUGgCUGAaGCGCgCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 18560 0.65 0.560122
Target:  5'- gGCGCGGCGgcgaauCCGAacccgUUCGUgcaacaaacgaccgGCGCGGCa -3'
miRNA:   3'- -CGUGCCGU------GGCUg----AAGCG--------------CGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 9580 0.76 0.118268
Target:  5'- gGCGCGGCAUCGGCcggUUGCGCacCGGCUg -3'
miRNA:   3'- -CGUGCCGUGGCUGa--AGCGCGc-GCUGA- -5'
26023 5' -58.2 NC_005342.2 + 20951 0.75 0.139455
Target:  5'- cCACGGgGCgGACgcaaaCGCGCGCGGCg -3'
miRNA:   3'- cGUGCCgUGgCUGaa---GCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 8963 0.75 0.159712
Target:  5'- uGCGCGGCGgCGACcgacgCGCGUucGCGGCUu -3'
miRNA:   3'- -CGUGCCGUgGCUGaa---GCGCG--CGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 8624 0.74 0.177791
Target:  5'- gGCGCGGCGcCCGGCUU-GCuCGUGACg -3'
miRNA:   3'- -CGUGCCGU-GGCUGAAgCGcGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 45146 0.73 0.208313
Target:  5'- -gGCGGCGCCGACggCGCauuCGCGAg- -3'
miRNA:   3'- cgUGCCGUGGCUGaaGCGc--GCGCUga -5'
26023 5' -58.2 NC_005342.2 + 5043 0.72 0.249529
Target:  5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3'
miRNA:   3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 44749 0.72 0.237108
Target:  5'- cGCGUGGCGCUGGCg--GCGCGCaGACg -3'
miRNA:   3'- -CGUGCCGUGGCUGaagCGCGCG-CUGa -5'
26023 5' -58.2 NC_005342.2 + 11719 0.73 0.197146
Target:  5'- gGCAgccgacCGGCACCGACgUUCaccuugaGUGCGCGACc -3'
miRNA:   3'- -CGU------GCCGUGGCUG-AAG-------CGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 24675 0.79 0.074721
Target:  5'- aCGCGGCGCCGaucaGCUgcaugccgauccgCGCGCGCGACa -3'
miRNA:   3'- cGUGCCGUGGC----UGAa------------GCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 25111 0.72 0.243253
Target:  5'- gGCACGGCGagcaCGGCggCGCGCacguucGCGGCc -3'
miRNA:   3'- -CGUGCCGUg---GCUGaaGCGCG------CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 14291 0.79 0.084369
Target:  5'- aGCGCGGCGCCGuucgccgcuuCUUCGauguagaCGCGCGACa -3'
miRNA:   3'- -CGUGCCGUGGCu---------GAAGC-------GCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 30116 0.74 0.182587
Target:  5'- aGCGacCGGCGCCGGaccgaaUUCGCGCgccguaGCGACUg -3'
miRNA:   3'- -CGU--GCCGUGGCUg-----AAGCGCG------CGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 30831 0.72 0.243253
Target:  5'- gGCGCGaGCugCuGC-UCGCGCGCGAg- -3'
miRNA:   3'- -CGUGC-CGugGcUGaAGCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 11587 0.71 0.255939
Target:  5'- -aACGcGCcgGCCGucACUUCGCGCGCGAa- -3'
miRNA:   3'- cgUGC-CG--UGGC--UGAAGCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 19568 0.77 0.102944
Target:  5'- gGCGCGGCACaaggGGaaUCGCGCGCGAUc -3'
miRNA:   3'- -CGUGCCGUGg---CUgaAGCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 28708 0.75 0.147259
Target:  5'- uGCGCGGCcgccggAUCGGCgugugcgUCGCGUGCGGCc -3'
miRNA:   3'- -CGUGCCG------UGGCUGa------AGCGCGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.