miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 3' -44.4 NC_007497.1 + 10559 0.65 0.997893
Target:  5'- uGGGGUGCAcggguugucgagcAGCCA--GACG-GCAGCg -3'
miRNA:   3'- uUUCUACGU-------------UUGGUugUUGCuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 8873 0.66 0.997472
Target:  5'- --uGAgGCcgGGACCGGCGAUGAaaucACGGCu -3'
miRNA:   3'- uuuCUaCG--UUUGGUUGUUGCU----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 4509 0.66 0.997472
Target:  5'- -uGGGUGCuGAUCGGCGG-GAAgAGCg -3'
miRNA:   3'- uuUCUACGuUUGGUUGUUgCUUgUCG- -5'
33060 3' -44.4 NC_007497.1 + 11255 0.66 0.997472
Target:  5'- --uGAUGCGAGC--ACAACGAAUAu- -3'
miRNA:   3'- uuuCUACGUUUGguUGUUGCUUGUcg -5'
33060 3' -44.4 NC_007497.1 + 36799 0.66 0.997472
Target:  5'- -cGGAU-CGAGCCAgaacgcGCGGuccuCGAGCAGCg -3'
miRNA:   3'- uuUCUAcGUUUGGU------UGUU----GCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 28852 0.66 0.997472
Target:  5'- -cGGuUGCucaaacacgAAGCCGACGACGGcCAGUg -3'
miRNA:   3'- uuUCuACG---------UUUGGUUGUUGCUuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 13623 0.66 0.996924
Target:  5'- gGAAGA-GCGGGCCGccGCAugGGccGCcGCa -3'
miRNA:   3'- -UUUCUaCGUUUGGU--UGUugCU--UGuCG- -5'
33060 3' -44.4 NC_007497.1 + 18355 0.66 0.996924
Target:  5'- uGGGGggGCAAAgCAACuuGCGGaucguuACGGCg -3'
miRNA:   3'- -UUUCuaCGUUUgGUUGu-UGCU------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 36420 0.66 0.996924
Target:  5'- ---aGUGCGAACuCGGCAGcCGAcaucugcgcgcGCAGCu -3'
miRNA:   3'- uuucUACGUUUG-GUUGUU-GCU-----------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 2496 0.66 0.996924
Target:  5'- -cAGcgGCGcACCGGCAcugcuaagcGCGAcaucGCGGCa -3'
miRNA:   3'- uuUCuaCGUuUGGUUGU---------UGCU----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 44776 0.66 0.996741
Target:  5'- -cGGAUGCuguuuuGGCCGGCAaguccaauaaggacGCGGccaucGCGGCa -3'
miRNA:   3'- uuUCUACGu-----UUGGUUGU--------------UGCU-----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 38588 0.66 0.996281
Target:  5'- gAAAGGgagGcCGAACgAACGA-GAACGGCg -3'
miRNA:   3'- -UUUCUa--C-GUUUGgUUGUUgCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 37771 0.66 0.996281
Target:  5'- cGAGAcaugGCGcuuGGCgGAgCGACGGGCGGCa -3'
miRNA:   3'- uUUCUa---CGU---UUGgUU-GUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 43641 0.66 0.996281
Target:  5'- aAGAGAaguUGCAGuACUAccGCGACGugcguGACGGCa -3'
miRNA:   3'- -UUUCU---ACGUU-UGGU--UGUUGC-----UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 8677 0.66 0.996281
Target:  5'- cGAGAUcaaGCGAGCUAACGAgGc-CGGCg -3'
miRNA:   3'- uUUCUA---CGUUUGGUUGUUgCuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 37079 0.66 0.996281
Target:  5'- -cAGGUGUAcugccgcACCAugcCAACGAACAGg -3'
miRNA:   3'- uuUCUACGUu------UGGUu--GUUGCUUGUCg -5'
33060 3' -44.4 NC_007497.1 + 40768 0.66 0.996281
Target:  5'- cGAGAUGCcGGCCcgUuGCGcauACAGCu -3'
miRNA:   3'- uUUCUACGuUUGGuuGuUGCu--UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 44400 0.66 0.995532
Target:  5'- gAAGGcgGCAAGCCGguuuGCucCG-GCGGCa -3'
miRNA:   3'- -UUUCuaCGUUUGGU----UGuuGCuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 33868 0.66 0.995532
Target:  5'- gAAGGggGCGAACgCAGcCGAgGcGCGGCa -3'
miRNA:   3'- -UUUCuaCGUUUG-GUU-GUUgCuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 36368 0.66 0.995532
Target:  5'- cGAAGGUGaagguuGCCGACaugaugccgaaGugGGGCGGCg -3'
miRNA:   3'- -UUUCUACguu---UGGUUG-----------UugCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.